Align 2-isopropylmalate synthase (EC 2.3.3.13) (characterized)
to candidate Pf1N1B4_847 2-isopropylmalate synthase (EC 2.3.3.13)
Query= BRENDA::P9WQB3 (644 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_847 Length = 559 Score = 579 bits (1492), Expect = e-169 Identities = 310/604 (51%), Positives = 404/604 (66%), Gaps = 63/604 (10%) Query: 42 PVNRYRPFAEEVEPIRLRNRTWPDRVIDRAPLWCAVDLRDGNQALIDPMSPARKRRMFDL 101 P ++YR F I + +RTWP + I AP+WC+ DLRDGNQ+LI+PM +K R + Sbjct: 7 PSSKYRAFPT----IDIPDRTWPSKTITAAPIWCSSDLRDGNQSLIEPMDAVKKLRFWKT 62 Query: 102 LVRMGYKEIEVGFPSASQTDFDFVREIIEQGAIPDDVTIQVLTQCRPELIERTFQACSGA 161 LV++G KEIE FP+ASQTDFDFVR +IE G IPDD TIQVLTQ R +LI RTF++ GA Sbjct: 63 LVQVGVKEIEASFPAASQTDFDFVRTLIEDGHIPDDTTIQVLTQGREDLIARTFESLRGA 122 Query: 162 PRAIVHFYNSTSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYT 221 +AIVH YN+TS RR+VF ++ ++AIA + A+ V+ AA+ P T+W FEYSPE+++ Sbjct: 123 KKAIVHLYNATSPSFRRIVFNQDKDGIKAIAVNAAKLFVKYAAQQPDTEWTFEYSPETFS 182 Query: 222 GTELEYAKQVCDAVGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVI 281 TELE+AK+VCDAV EV PTPE +I NLPATVE TPN+YAD IEW R++ R+SVI Sbjct: 183 ATELEFAKEVCDAVIEVWNPTPEHKVILNLPATVECATPNIYADQIEWFGRHINRRDSVI 242 Query: 282 LSLHPHNDRGTAVAAAELGFAAGADRIEGCLFGNGERTGNVCLVTLGLNLFSRGVDPQID 341 +SLH HNDRGT VAA ELG AGADR+EGCLFGNGERTGNV LVT+ LNL+++GVDP++D Sbjct: 243 ISLHTHNDRGTGVAATELGLMAGADRVEGCLFGNGERTGNVDLVTVALNLYTQGVDPELD 302 Query: 342 FSNIDEIRRTVEYCNQLPVHERHPYGGDLVYTAFSGSHQDAINKGLDAMKLDADAADCDV 401 FS+ID +R+ VE CNQ+ VH RHPY GDLV+TAFSGSHQDAI KG + DA Sbjct: 303 FSDIDGVRKVVEECNQIQVHPRHPYVGDLVHTAFSGSHQDAIRKGFAQQQPDA------- 355 Query: 402 DDMLWQVPYLPIDPRDVGRTYEAVIRVNSQSGKGGVAYIMKTDHGLSLPRRLQIEFSQVI 461 LW+VPYLPIDP D+GR+YEAVIRVNSQSGKGG+AY+++ ++G++LPRR+QIEFSQV+ Sbjct: 356 ---LWEVPYLPIDPADIGRSYEAVIRVNSQSGKGGIAYLLEQEYGINLPRRMQIEFSQVV 412 Query: 462 QKIAEGTAGEGGEVSPKEMWDAFAEEYLAPVRPLERIRQHVDAADDDGGTTSITATVKIN 521 Q+ T G E++ +++ EYL P + + ++ G +++ V Sbjct: 413 QR---ETDRLGLEMTAQQIHALLHSEYLQANTPYALVSHRL---QEENGHSAVEVEVSSK 466 Query: 522 GV-ETEI--SGSGNGPLAAFVHALADVGFDVAVLDYYEHAMSAGDDAQAAAYVEASVTIA 578 G ET + G GNG L A V A + V ++DY EHA+ AG +A+AAAY+E V Sbjct: 467 GQGETNLHWRGKGNGALEALV---AGLPIPVEIMDYNEHAIGAGTNAKAAAYIELRVN-- 521 Query: 579 SPAQPGEAGRHASDPVTIASPAQPGEAGRHASDPVTSKTVWGVGIAPSITTASLRAVVSA 638 GE + V GVGI +ITTAS +A+ SA Sbjct: 522 -----GE------------------------------RAVHGVGIDENITTASFKALFSA 546 Query: 639 VNRA 642 +NR+ Sbjct: 547 LNRS 550 Lambda K H 0.317 0.133 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 915 Number of extensions: 42 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 2 Number of HSP's successfully gapped: 2 Length of query: 644 Length of database: 559 Length adjustment: 37 Effective length of query: 607 Effective length of database: 522 Effective search space: 316854 Effective search space used: 316854 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate Pf1N1B4_847 (2-isopropylmalate synthase (EC 2.3.3.13))
to HMM TIGR00970 (leuA: 2-isopropylmalate synthase (EC 2.3.3.13))
../bin/blast/fastacmd -i /tmp/list.7073.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7073.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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