Align dihydrodipicolinate reductase; EC 1.3.1.26 (characterized)
to candidate Pf1N1B4_1174 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)
Query= CharProtDB::CH_002128 (273 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_1174 Length = 268 Score = 340 bits (873), Expect = 1e-98 Identities = 176/265 (66%), Positives = 207/265 (78%), Gaps = 1/265 (0%) Query: 7 RVAIAGAGGRMGRQLIQAALALEGVQ-LGAALEREGSSLLGSDAGELAGAGKTGVTVQSS 65 R+A+ GA GRMG+ L++A + L AA+ R GS+L+G DAGELA G+ GV + Sbjct: 3 RIAVMGAAGRMGKILVEAVQQRAPLTGLTAAIVRPGSTLIGVDAGELASLGRIGVPLSGK 62 Query: 66 LDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVF 125 LDAV D+FDV IDFT PE L +L FCR+ GK MVIGTTG D A KQ + +A+ DIAIVF Sbjct: 63 LDAVADEFDVLIDFTLPEVMLKNLEFCRKAGKSMVIGTTGLDVAQKQLLAEASKDIAIVF 122 Query: 126 AANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKD 185 AANFSVGVN+ LKLL+ AA+V+GD DIEIIEAHHRHK+DAPSGTAL MGE IA ALD+D Sbjct: 123 AANFSVGVNLSLKLLDMAARVLGDEADIEIIEAHHRHKIDAPSGTALRMGEVIASALDRD 182 Query: 186 LKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFAN 245 L+ AVY REGHTG R TIGFATVR GD+VG+HT +FA GERLEITHKASSRMTFA Sbjct: 183 LQKVAVYGREGHTGVRERETIGFATVRGGDVVGDHTVLFACEGERLEITHKASSRMTFAK 242 Query: 246 GAVRSALWLSGKESGLFDMRDVLDL 270 GAVR+ALWL G+E GL+DM+DVLDL Sbjct: 243 GAVRAALWLDGREPGLYDMQDVLDL 267 Lambda K H 0.319 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 275 Number of extensions: 10 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 273 Length of database: 268 Length adjustment: 25 Effective length of query: 248 Effective length of database: 243 Effective search space: 60264 Effective search space used: 60264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate Pf1N1B4_1174 (4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))
to HMM TIGR00036 (dapB: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))
../bin/blast/fastacmd -i /tmp/list.8530.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8530.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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