Align 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase; EC 2.3.1.117 (characterized)
to candidate Pf1N1B4_3077 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117)
Query= SwissProt::G3XD76 (344 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_3077 Length = 344 Score = 589 bits (1519), Expect = e-173 Identities = 295/344 (85%), Positives = 321/344 (93%) Query: 1 MSQSLFSLAFGVGTQNRQEAWLEVFYALPLLKPSSEIVAAVAPILGYAAGNQALTFTSQQ 60 MS +LFSLAFGVGTQNRQ AWLEVFYA PLL PS+E+VAA+AP+LGY GNQA+ F++ Q Sbjct: 1 MSTTLFSLAFGVGTQNRQGAWLEVFYAQPLLNPSAELVAAIAPVLGYTDGNQAIAFSTAQ 60 Query: 61 AYQLADALKGIDAAQSALLSRLAESQKPLVATLLAEDAAPSSTAEAYLKLHLLSHRLVKP 120 A QLA+ALK +DAAQ+ALL+RLAES KPLVATLLAEDA SST EAYLKLHLLSHRLVKP Sbjct: 61 ASQLAEALKSVDAAQAALLTRLAESHKPLVATLLAEDAQLSSTPEAYLKLHLLSHRLVKP 120 Query: 121 HAVNLSGIFPLLPNVAWTNIGAVDLAELAELQLEARLKGKLLEVFSVDKFPKMTDYVVPA 180 H +NL+GIFPLLPNVAWT+ GA+DLAELAE QLEARL+G+LLEVFSVDKFPKMTDYVVPA Sbjct: 121 HGLNLAGIFPLLPNVAWTSQGAIDLAELAEHQLEARLRGELLEVFSVDKFPKMTDYVVPA 180 Query: 181 GVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGC 240 GVRIAD AR+RLGAY+GEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGC Sbjct: 181 GVRIADAARIRLGAYVGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGC 240 Query: 241 STMGTLSGGGNIVISVGEGCLIGANAGIGIPLGDRNIVEAGLYITAGTKVALLDEQNALV 300 STMGTLSGGGNIVI VGEGCLIGANAGIGIPLGDRN VE+GLY+TAGTKVALLDE N LV Sbjct: 241 STMGTLSGGGNIVIKVGEGCLIGANAGIGIPLGDRNTVESGLYVTAGTKVALLDENNKLV 300 Query: 301 KVVKARDLAGQPDLLFRRNSQNGAVECKTNKTAIELNEALHAHN 344 KVVKAR+LAGQPDLLFRRNS+ GAVECKT+K+AIELNEALHAHN Sbjct: 301 KVVKARELAGQPDLLFRRNSETGAVECKTHKSAIELNEALHAHN 344 Lambda K H 0.317 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 462 Number of extensions: 15 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 344 Length of database: 344 Length adjustment: 29 Effective length of query: 315 Effective length of database: 315 Effective search space: 99225 Effective search space used: 99225 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate Pf1N1B4_3077 (2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117))
to HMM TIGR03536 (dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117))
../bin/blast/fastacmd -i /tmp/list.16618.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16618.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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