Align Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic; AGPR; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase; EC 1.2.1.38 (characterized)
to candidate Pf1N1B4_2559 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Query= SwissProt::Q93Z70 (401 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_2559 Length = 344 Score = 312 bits (800), Expect = 8e-90 Identities = 163/345 (47%), Positives = 220/345 (63%), Gaps = 4/345 (1%) Query: 59 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK 118 +++G++G +GYTG E++RLLA HP +V ++T+ +AG ++ ++P+LR SV Sbjct: 2 VKVGIVGGTGYTGVELLRLLAQHPQAEVVVITSRSEAGLAVADMYPNLRGHYDGLAFSVP 61 Query: 119 DAD-FSTVDAVFCCLPHGTTQEIIKELPTA-LKIVDLSADFRLRNIAEYEEWYGQPHKAV 176 D D VF PHG + EL A K++DLSADFRL++ E+ +WYGQPH A Sbjct: 62 DIKTLGACDVVFFATPHGVAHALAGELLAAGTKVIDLSADFRLQDADEWAKWYGQPHGAP 121 Query: 177 ELQKEVVYGLTEILREDIKKARLVANPGCYPTTIQLPLVPLLKANLIKHENIIIDAKSGV 236 EL +E VYGL E+ RE IK+ARL+A PGCYPT QL +PLL+A L +I D KSGV Sbjct: 122 ELLEEAVYGLPEVNREQIKQARLIAVPGCYPTATQLGFLPLLEAGLADTTRLIADCKSGV 181 Query: 237 SGAGRGAKEANLYSEIAEGISSYGVTRHRHVPEIEQGLSDVAQSKVTVSFTPHLMPMIRG 296 SGAGRGA +LYSE +E + +Y V HRH+PEI QGL A V ++F PHL PMIRG Sbjct: 182 SGAGRGASVGSLYSETSESMKAYAVKGHRHLPEIRQGLRRAAGKDVGLTFVPHLTPMIRG 241 Query: 297 MQSTIYVEMAPGVRTEDLHQQLKTSYEDEEFVKVLDEGVVPRTHNVRGSNYCHMSVFPDR 356 + ST+Y + R+ DL + Y +E FV V+ G P T +VRG+N C ++V + Sbjct: 242 IHSTLYATVVD--RSVDLQALFEKRYANEPFVDVMPAGSHPETRSVRGANVCRIAVHRPQ 299 Query: 357 IPGRAIIISVIDNLVKGASGQALQNLNIMLGYPETTGLLHQPLFP 401 +++SVIDNLVKGASGQA+QNLNI+ G E GL H + P Sbjct: 300 DGDLVVVLSVIDNLVKGASGQAVQNLNILFGLDERLGLSHAGMLP 344 Lambda K H 0.318 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 408 Number of extensions: 12 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 401 Length of database: 344 Length adjustment: 30 Effective length of query: 371 Effective length of database: 314 Effective search space: 116494 Effective search space used: 116494 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate Pf1N1B4_2559 (N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))
../bin/blast/fastacmd -i /tmp/list.12908.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.12908.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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