Align glutamate 5-kinase (EC 2.7.2.11) (characterized)
to candidate Pf1N1B4_2800 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA
Query= BRENDA::P0A7B5 (367 letters) >FitnessBrowser__pseudo1_N1B4:Pf1N1B4_2800 Length = 372 Score = 297 bits (761), Expect = 3e-85 Identities = 161/366 (43%), Positives = 230/366 (62%), Gaps = 1/366 (0%) Query: 1 MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHL 60 ++ +Q VVK+G+++LT + L+RA + V Q LH AG +V+V+SGA+AAG L Sbjct: 5 VTGAQRWVVKIGSALLTADGKGLDRAAMGVWVEQMVALHEAGVELVLVSSGAVAAGMSRL 64 Query: 61 GYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDT 120 G+ P+ + Q AA+GQ L+Q WE F+ +G H Q+LLT D+ DR+R+LNAR T Sbjct: 65 GWTVRPSAMHELQAAAAIGQMGLVQAWESSFAEHGRHTAQILLTHDDLSDRKRYLNARST 124 Query: 121 LRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPR 180 LRAL++ ++PVINEND V T EI+ GDND L+AL A L AD L++LTD+ G++ ADPR Sbjct: 125 LRALVELKVIPVINENDTVVTDEIRFGDNDTLAALVANLVEADLLVILTDRDGMFDADPR 184 Query: 181 SNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPG 240 +NP A+LI + D AL A+AG + LG GGM TKL+AA +A R+G TII G Sbjct: 185 NNPDAKLIYEARADDPALDAVAGSTGGALGRGGMQTKLRAARLAARSGAHTIIVGGRIDR 244 Query: 241 VIGDVMEGISVGTLFHAQATPLENRKRWIFG-APPAGEITVDEGATAAILERGSSLLPKG 299 V+ + G +GTL + L RK+W+ G G + +D GA A+ SLLP G Sbjct: 245 VLDRLKAGERIGTLLSPERGMLAARKQWLAGHLQTRGTLVLDAGAVTALSLGNKSLLPVG 304 Query: 300 IKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAV 359 +K V G+F RGE++ +GR+IA G++ Y++ ++I G S+ I +LGY P V Sbjct: 305 VKLVQGSFRRGEMVVCVAPDGREIARGLANYSALEAQKIIGQSSEAIVGLLGYMAEPELV 364 Query: 360 HRDDMI 365 HRD++I Sbjct: 365 HRDNLI 370 Lambda K H 0.318 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 354 Number of extensions: 12 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 367 Length of database: 372 Length adjustment: 30 Effective length of query: 337 Effective length of database: 342 Effective search space: 115254 Effective search space used: 115254 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate Pf1N1B4_2800 (Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA)
to HMM TIGR01027 (proB: glutamate 5-kinase (EC 2.7.2.11))
../bin/blast/fastacmd -i /tmp/list.2424.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.2424.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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