Align Secreted chorismate mutase; CM; EC 5.4.99.5 (characterized)
to candidate AO353_12165 AO353_12165 chorismate mutase
Query= SwissProt::A0QU81 (181 letters) >FitnessBrowser__pseudo3_N2E3:AO353_12165 Length = 192 Score = 73.2 bits (178), Expect = 3e-18 Identities = 55/181 (30%), Positives = 81/181 (44%), Gaps = 6/181 (3%) Query: 1 MLASVALAALAGVGTPHATADDASPLVPLVDAAAQRLQTADPVAASKFRSGGAIDDPDRE 60 +LA+ A AA P T A+ L PL+ +RL AD VA SK+ SG ++D RE Sbjct: 13 LLANTACAATTATHAPAPTPAPAA-LAPLLSTIQERLVIADKVALSKWDSGKPVEDRQRE 71 Query: 61 QQVIAAVTGDATRHNIDPGYVHDVFRNQIDATSSVEHTRFAQWKLDPAAAPSSAPDL-SE 119 ++VIA +A + + V F QI+A V++ + W A PDL Sbjct: 72 REVIADAIAEAPYYKLSNEAVEQFFSAQIEANKLVQYAHLSDWHAQGKAPNDPRPDLVGL 131 Query: 120 SRQKIDTLNRTMVDEIARQWPVLHSPVCRPDLDRALDAVATARGFDPVYRHALEYATHSY 179 R ++D L ++ ++A P + P C L +A A P+ AL AT Sbjct: 132 IRPQLDLLQTRLLQQLADFTPYRNDPHCPSWLAKANKAATQV----PLRELALVRATAEL 187 Query: 180 C 180 C Sbjct: 188 C 188 Lambda K H 0.318 0.130 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 75 Number of extensions: 2 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 181 Length of database: 192 Length adjustment: 20 Effective length of query: 161 Effective length of database: 172 Effective search space: 27692 Effective search space used: 27692 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 44 (21.6 bits)
Align candidate AO353_12165 AO353_12165 (chorismate mutase)
to HMM TIGR01806 (putative chorismate mutase (EC 5.4.99.5))
../bin/blast/fastacmd -i /tmp/list.6523.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.6523.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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