Align shikimate dehydrogenase (EC 1.1.1.25) (characterized)
to candidate AO356_11315 AO356_11315 shikimate dehydrogenase
Query= BRENDA::Q88RQ5 (274 letters) >FitnessBrowser__pseudo5_N2C3_1:AO356_11315 Length = 273 Score = 437 bits (1124), Expect = e-127 Identities = 214/272 (78%), Positives = 242/272 (88%) Query: 1 MDQYVVFGNPIGHSKSPLIHRLFAEQTGQDLEYATLLAPLDEFSDCARGFFKQGSGGNVT 60 MD+YVV GNPIGHSKSPLIHRLFAEQTGQ L+Y TLLAPL++F+ CAR FF++G G NVT Sbjct: 1 MDRYVVMGNPIGHSKSPLIHRLFAEQTGQVLDYTTLLAPLEDFAGCARAFFREGRGANVT 60 Query: 61 VPFKEEAFRLCDSLTPRARRAGAVNTLSKLADGTLQGDNTDGAGLVRDLTVNAGVELAGK 120 VPFKE+AFRL D+LT RA+RAGAVNTLSKLADG L GDNTDGAGLVRDLTVNAG L GK Sbjct: 61 VPFKEDAFRLADTLTERAQRAGAVNTLSKLADGRLLGDNTDGAGLVRDLTVNAGFSLQGK 120 Query: 121 RILILGAGGAVRGVLEPILAHKPQSLVIANRTVEKAEQLAREFDELGPVVASGFAWLQEP 180 RIL+LGAGGAVRG LEP+LA P S++IANRTVEKAE LA+ F +LGPV ASGF WLQEP Sbjct: 121 RILLLGAGGAVRGALEPLLAEAPASVIIANRTVEKAEGLAKSFADLGPVSASGFDWLQEP 180 Query: 181 VDVIINATSASLAGELPPIADSLVEAGRTVCYDMMYGKEPTPFCQWATKLGAAKVLDGLG 240 VD+IINATSASL+G++PPIA SL+E G+TVCYDMMYGKEPT FC+WA++ GAA +DGLG Sbjct: 181 VDLIINATSASLSGDVPPIAASLIEPGKTVCYDMMYGKEPTSFCRWASEHGAAVAMDGLG 240 Query: 241 MLAEQAAEAFFIWRGVRPDTAPVLAELRRQLA 272 MLAEQA EAF++WRGVRPDTAPVLAELRRQLA Sbjct: 241 MLAEQAGEAFYLWRGVRPDTAPVLAELRRQLA 272 Lambda K H 0.319 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 324 Number of extensions: 8 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 274 Length of database: 273 Length adjustment: 25 Effective length of query: 249 Effective length of database: 248 Effective search space: 61752 Effective search space used: 61752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate AO356_11315 AO356_11315 (shikimate dehydrogenase)
to HMM TIGR00507 (aroE: shikimate dehydrogenase (EC 1.1.1.25))
../bin/blast/fastacmd -i /tmp/list.10073.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10073.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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