Align 3-deoxy-7-phosphoheptulonate synthase, Tyr-sensitive (EC 2.5.1.54) (characterized)
to candidate AO356_00370 AO356_00370 phospho-2-dehydro-3-deoxyheptonate aldolase
Query= ecocyc::AROF-MONOMER (356 letters) >FitnessBrowser__pseudo5_N2C3_1:AO356_00370 Length = 356 Score = 358 bits (920), Expect = e-104 Identities = 180/327 (55%), Positives = 228/327 (69%), Gaps = 4/327 (1%) Query: 22 QLKAAFPLSLQQEAQIADSRKSISDIIAGRDPRLLVVCGPCSIHDPETALEYARRFKALA 81 QLK PLS Q++ R++I I+ G D RLLV+ GPCSIHDP++ALEYA +A Sbjct: 29 QLKHQLPLSTALSHQVSAHRQAIRAILNGEDARLLVIVGPCSIHDPKSALEYAANLARVA 88 Query: 82 AEVSDSLYLVMRVYFEKPRTTVGWKGLINDPHMDGSFDVEAGLQIARKLLLELVNMGLPL 141 EVSDS++LVMR Y EKPRTTVGWKGL DP +DGS D+ AGL ++R+L+ E++ +GLP+ Sbjct: 89 HEVSDSMFLVMRAYVEKPRTTVGWKGLAYDPGLDGSDDMAAGLTLSRELMREMLQLGLPV 148 Query: 142 ATEALDPNSPQYLGDLFSWSAIGARTTESQTHREMASGLSMPVGFKNGTDGSLATAINAM 201 ATE L P + Y DL SW AIGARTTESQ HREMASGL MPVGFKNGTDG + A +AM Sbjct: 149 ATELLQPMAASYFDDLLSWVAIGARTTESQIHREMASGLGMPVGFKNGTDGGVGIACDAM 208 Query: 202 RAAAQPHRFVGINQAGQVALLQTQGNPDGHVILRGG-KAPNYSPADVAQCEKEMEQAGLR 260 R+AA PHR G++ G A++QT GNPD H++LRGG + PNY V Q ++ + + Sbjct: 209 RSAAHPHRHFGVDSQGHPAIIQTPGNPDTHLVLRGGHRGPNYDRQSVTQIHSDLTRLKIP 268 Query: 261 PSLMVDCSHGNSNKDYRRQPAVAESVVAQIKDGNRSIIGLMIESNIHEGNQSSEQPRSEM 320 +MVDCSH NS KD RQP V + V+ Q GNRS+IG+M+ES++ EG Q M Sbjct: 269 ARIMVDCSHANSGKDPLRQPQVFDDVLEQRLQGNRSLIGMMLESHLFEGCQPL---GPSM 325 Query: 321 KYGVSVTDACISWEMTDALLREIHQDL 347 +YGVSVTD C+ WE T+ LLRE H+ L Sbjct: 326 RYGVSVTDGCLGWESTEQLLREAHRRL 352 Lambda K H 0.316 0.131 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 419 Number of extensions: 15 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 356 Length of database: 356 Length adjustment: 29 Effective length of query: 327 Effective length of database: 327 Effective search space: 106929 Effective search space used: 106929 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate AO356_00370 AO356_00370 (phospho-2-dehydro-3-deoxyheptonate aldolase)
to HMM TIGR00034 (3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54))
../bin/blast/fastacmd -i /tmp/list.29942.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29942.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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