GapMind for Amino acid biosynthesis

 

Alignments for a candidate for hisC in Pseudomonas fluorescens FW300-N2C3

Align Histidinol-phosphate aminotransferase; EC 2.6.1.9; Imidazole acetol-phosphate transaminase (uncharacterized)
to candidate AO356_03460 AO356_03460 aspartate aminotransferase

Query= curated2:Q9RI00
         (366 letters)



>FitnessBrowser__pseudo5_N2C3_1:AO356_03460
          Length = 370

 Score =  443 bits (1140), Expect = e-129
 Identities = 236/371 (63%), Positives = 277/371 (74%), Gaps = 11/371 (2%)

Query: 1   MSADFLALAVPGVQKLSPYVTGKPIDELARELGIEPARIVKLASNENPLGPNPRVLEAVR 60
           MS +FLALA PGVQ+LSPYV GKP+DELAREL ++PA IVKLASNENPLG +P+ L A+R
Sbjct: 1   MSGNFLALAQPGVQQLSPYVPGKPVDELARELDLDPASIVKLASNENPLGASPKALAAIR 60

Query: 61  GELSELTRYPDGSGFRLKAKLAERFGLKSEQITLGNGSNDIIDLVARC-CGAGPNAVFSA 119
            EL+ELTRYPDG+GF LK+ LAER G++  Q+TLGNGSNDI++LVAR     G NAVFS 
Sbjct: 61  DELAELTRYPDGNGFALKSLLAERCGVELNQVTLGNGSNDILELVARAYLAPGLNAVFSE 120

Query: 120 HAFAAYPLCTQAAGAESRVVPAVDYGHDLDGMLKAIDEQTAVIFIANPNNPTGNLVRAQA 179
           HAFA YP+ TQA GA++ VVPA D+GHDL  ML AID  T V+FIANPNNPTG    AQA
Sbjct: 121 HAFAVYPIATQAVGADAHVVPAKDWGHDLPAMLAAIDANTRVVFIANPNNPTGTWFDAQA 180

Query: 180 LESFLDRVPERVLVVLDEAYIEFYRGTNC-QRLNYLVRYPNLLVSRTLSKVYGLAGLRVG 238
           L+ FL  VP  VLVVLDEAYIE+  G++    L++L  YPNLLVSRT SK YGLA LRVG
Sbjct: 181 LDDFLQDVPAHVLVVLDEAYIEYAEGSDLPDGLDFLAAYPNLLVSRTFSKAYGLASLRVG 240

Query: 239 YSASSPQIADVLNRVRQPFNVNSLALVAACA-----GWMTSSIWLKGGGWIAPVWELEQG 293
           Y  S+  +ADVLNRVRQPFNVNS AL AACA      ++  S  L   G    + +LE G
Sbjct: 241 YGLSTAVVADVLNRVRQPFNVNSFALAAACAALQDEAYLAESRRLNAAG----MQQLEAG 296

Query: 294 LAELRLKWIPSRGNFLAVDLGRDAAPINAGLLRDGVIVRPIAGYDCPTFLRVSIGTEQEN 353
           L EL L WIPS+GNF+ VDLGR AAP+  GLLR+GVIVRP+A Y  P  LR++IG   EN
Sbjct: 297 LRELGLGWIPSKGNFICVDLGRVAAPVYQGLLREGVIVRPVANYGMPNHLRITIGLPTEN 356

Query: 354 ARFLEALRVVL 364
           +RFLEAL  VL
Sbjct: 357 SRFLEALSKVL 367


Lambda     K      H
   0.320    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 476
Number of extensions: 22
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 370
Length adjustment: 30
Effective length of query: 336
Effective length of database: 340
Effective search space:   114240
Effective search space used:   114240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate AO356_03460 AO356_03460 (aspartate aminotransferase)
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.13056.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13056.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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