GapMind for Amino acid biosynthesis

 

Alignments for a candidate for hisC in Pseudomonas fluorescens FW300-N2C3

Align Histidinol-phosphate aminotransferase; EC 2.6.1.9; Imidazole acetol-phosphate transaminase (uncharacterized)
to candidate AO356_06960 AO356_06960 histidinol-phosphate aminotransferase

Query= curated2:Q48ED0
         (350 letters)



>FitnessBrowser__pseudo5_N2C3_1:AO356_06960
          Length = 350

 Score =  591 bits (1524), Expect = e-174
 Identities = 292/350 (83%), Positives = 315/350 (90%)

Query: 1   MSKFWSPFVSGLVPYVPGEQPKLTRLVKLNTNENPYGPSPKAVEAMRAALTDDLRLYPDP 60
           MSKFWSPFV  LVPYVPGEQPKLTRLVKLNTNENPYGPSPKA+ AM+  L D+LRLYPDP
Sbjct: 1   MSKFWSPFVKNLVPYVPGEQPKLTRLVKLNTNENPYGPSPKALAAMQTELNDNLRLYPDP 60

Query: 61  NSDLLKHAVADYYKVQPNQVFLGNGSDEVLAHIFHALFQHDASLLFPDISYSFYPVYCGL 120
           NSDLLK AVA YY VQ NQVFLGNGSDEVLAHIFH L QHD  LLFPDISYSFYPVYCGL
Sbjct: 61  NSDLLKGAVARYYGVQSNQVFLGNGSDEVLAHIFHGLLQHDQPLLFPDISYSFYPVYCGL 120

Query: 121 YGIDYEMIALDDQFQIRAEDYAKPNAGIIFPNPNAPTGCLLGLDKVEQIIKASPDSVVVV 180
           YGI ++ + LD+QF+I   DYAKPN GIIFPNPNAPTGCLL LD VE+I+KASPDSVVVV
Sbjct: 121 YGIQFDAVPLDEQFRIDPADYAKPNGGIIFPNPNAPTGCLLALDAVERILKASPDSVVVV 180

Query: 181 DEAYIDFGGETAITLVDRYPNLLVTQTLSKSRSLAGLRVGLAVGHSDLIEALERVKNSFN 240
           DEAYIDFGGETAI+LVDRYPNLLVTQTLSKSRSLAGLRVGLAVGH DLIEALER+KNSFN
Sbjct: 181 DEAYIDFGGETAISLVDRYPNLLVTQTLSKSRSLAGLRVGLAVGHPDLIEALERIKNSFN 240

Query: 241 SYPLDRMANVGGAAAFEDREHFESTRNKVIESREALVEQLQGKGFEVLPSAANFIFARHP 300
           SYPLDR+ANVGGAAAF+DREHF+ T   VIE RE +V QL+ KGFEVLPSAANFIFARHP
Sbjct: 241 SYPLDRLANVGGAAAFDDREHFDRTCRLVIEHREWVVTQLEAKGFEVLPSAANFIFARHP 300

Query: 301 QHDAAALAAKLREQGVIVRHFKQQRIAQFLRISIGTPEQHQALLEGLSDI 350
           +HDAA LAAKLREQGVIVRHFKQ+RIAQFLRISIGTPEQ+QAL+E L ++
Sbjct: 301 RHDAAGLAAKLREQGVIVRHFKQERIAQFLRISIGTPEQNQALIEALGEL 350


Lambda     K      H
   0.319    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 561
Number of extensions: 14
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 350
Length adjustment: 29
Effective length of query: 321
Effective length of database: 321
Effective search space:   103041
Effective search space used:   103041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate AO356_06960 AO356_06960 (histidinol-phosphate aminotransferase)
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.4876.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.4876.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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