Align 2-isopropylmalate synthase (EC 2.3.3.13) (characterized)
to candidate AO356_06550 AO356_06550 2-isopropylmalate synthase
Query= BRENDA::P9WQB3 (644 letters) >FitnessBrowser__pseudo5_N2C3_1:AO356_06550 Length = 559 Score = 588 bits (1515), Expect = e-172 Identities = 312/604 (51%), Positives = 405/604 (67%), Gaps = 63/604 (10%) Query: 42 PVNRYRPFAEEVEPIRLRNRTWPDRVIDRAPLWCAVDLRDGNQALIDPMSPARKRRMFDL 101 P ++YR F I L +RTWP + I AP+WC+ DLRDGNQ+LI+PM +K R + Sbjct: 7 PSSKYRAFPT----INLPDRTWPSKTITAAPIWCSSDLRDGNQSLIEPMDAVKKLRFWKT 62 Query: 102 LVRMGYKEIEVGFPSASQTDFDFVREIIEQGAIPDDVTIQVLTQCRPELIERTFQACSGA 161 LV +G KEIE FP+ASQTDFDFVR +IE+G IPDD TIQVLTQ R +LI RTF++ GA Sbjct: 63 LVAVGVKEIEASFPAASQTDFDFVRTLIEEGHIPDDTTIQVLTQAREDLIARTFESLRGA 122 Query: 162 PRAIVHFYNSTSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYT 221 +AIVH YN+T RR+VF ++ V+ IA + A+ V+ AA+ P TQW+FEYSPE+++ Sbjct: 123 KKAIVHLYNATCPSFRRIVFNQDKEGVKEIAVNAAKLFVKYAAQQPETQWQFEYSPETFS 182 Query: 222 GTELEYAKQVCDAVGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVI 281 TELE+AK+VCDAV EV PTPER +I NLPATVE+ TPN+YAD IEW RN+ R+SV+ Sbjct: 183 ATELEFAKEVCDAVIEVWNPTPERKVILNLPATVEVATPNIYADQIEWFHRNITRRDSVL 242 Query: 282 LSLHPHNDRGTAVAAAELGFAAGADRIEGCLFGNGERTGNVCLVTLGLNLFSRGVDPQID 341 +SLH HNDRGT VAA ELG AGADR+EGCLFGNGERTGNV LVT+ LNL+++G++P++D Sbjct: 243 ISLHTHNDRGTGVAATELGLMAGADRVEGCLFGNGERTGNVDLVTVALNLYTQGINPELD 302 Query: 342 FSNIDEIRRTVEYCNQLPVHERHPYGGDLVYTAFSGSHQDAINKGLDAMKLDADAADCDV 401 FS+ID +R+ VE CNQ+PVH RHPY GDLV+TAFSGSHQDAI KG K Sbjct: 303 FSDIDGVRKVVEECNQIPVHPRHPYVGDLVHTAFSGSHQDAIRKGFAQQK---------- 352 Query: 402 DDMLWQVPYLPIDPRDVGRTYEAVIRVNSQSGKGGVAYIMKTDHGLSLPRRLQIEFSQVI 461 D LW+VPYLPIDP D+GR+YEAVIRVNSQSGKGG+AY+++ ++G+SLPRR+QIEFSQV+ Sbjct: 353 PDTLWEVPYLPIDPADIGRSYEAVIRVNSQSGKGGIAYLLEQEYGISLPRRMQIEFSQVV 412 Query: 462 QKIAEGTAGEGGEVSPKEMWDAFAEEYLAPVRPLERIRQHVDAADDDGGTTSITATVKIN 521 Q+ T G E++ +++ EYL P + + ++ G +++ V Sbjct: 413 QR---ETDRLGLEMTAQQIHGLLQREYLQANTPYALVSHRL---QEENGNSAVEVEVASK 466 Query: 522 GV-ETEI--SGSGNGPLAAFVHALADVGFDVAVLDYYEHAMSAGDDAQAAAYVEASVTIA 578 G ET + G GNG L A V A + V ++DY EHA+ AG +A+AAAY+E V Sbjct: 467 GQGETNLHWRGKGNGALEALV---AGLPIPVEIMDYNEHAIGAGTNAKAAAYIELRVN-- 521 Query: 579 SPAQPGEAGRHASDPVTIASPAQPGEAGRHASDPVTSKTVWGVGIAPSITTASLRAVVSA 638 GE + V GVGI +ITTAS +A+ SA Sbjct: 522 -----GE------------------------------RAVHGVGIDENITTASFKALFSA 546 Query: 639 VNRA 642 +NR+ Sbjct: 547 LNRS 550 Lambda K H 0.317 0.133 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 895 Number of extensions: 41 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 2 Number of HSP's successfully gapped: 2 Length of query: 644 Length of database: 559 Length adjustment: 37 Effective length of query: 607 Effective length of database: 522 Effective search space: 316854 Effective search space used: 316854 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate AO356_06550 AO356_06550 (2-isopropylmalate synthase)
to HMM TIGR00970 (leuA: 2-isopropylmalate synthase (EC 2.3.3.13))
../bin/blast/fastacmd -i /tmp/list.29072.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.29072.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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