Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate AO356_13080 AO356_13080 acetylornithine deacetylase
Query= ecocyc::ACETYLORNDEACET-MONOMER (383 letters) >FitnessBrowser__pseudo5_N2C3_1:AO356_13080 Length = 385 Score = 362 bits (930), Expect = e-105 Identities = 190/379 (50%), Positives = 247/379 (65%), Gaps = 5/379 (1%) Query: 5 LPPFIEIYRALIATPSISATEEALDQSNADLITLLADWFKDLGFNVEVQPV-PGTRNKFN 63 LP + + ALIATPS+S T+ LDQSN+ +I LLA W +LGF+ +VQ V PG KFN Sbjct: 3 LPSMKDQFAALIATPSVSCTQPGLDQSNSAVIELLAGWLTELGFSCDVQQVSPG---KFN 59 Query: 64 MLASIGQGAGGLLLAGHTDTVPFDDGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILDA 123 +LAS G G GGL+LAGH+DTVPFD W DP LTE DG+ GLG+ DMKGFFA ++A Sbjct: 60 LLASFGSGPGGLVLAGHSDTVPFDGALWQTDPLKLTEVDGRWVGLGSCDMKGFFALAIEA 119 Query: 124 LRDVDVTKLKKPLYILATADEETSMAGARYFAETTALRPDCAIIGEPTSLQPVRAHKGHI 183 ++ + K+PL ILAT DEE+SMAGAR A+ A+IGEPT L+P+R HKG + Sbjct: 120 VKPLLDQPFKQPLLILATCDEESSMAGARALADAGRPLGRAAVIGEPTGLRPIRLHKGVM 179 Query: 184 SNAIRIQGQSGHSSDPARGVNAIELMHDAIGHILQLRDNLKERYHYEAFTVPYPTLNLGH 243 I I G+SGHSSDP+ G +A+E MHDA+G + LR + + F+VP PTLN G Sbjct: 180 MERIDILGRSGHSSDPSLGRSALEAMHDAMGELRGLRLQWQREFRNPQFSVPQPTLNFGC 239 Query: 244 IHGGDASNRICACCELHMDIRPLPGMTLNELNGLLNDALAPVSERWPGRLTVDELHPPIP 303 IHGGD NRIC C + D+RPLPGM L + L P++ER ++ L P +P Sbjct: 240 IHGGDNPNRICGQCSMEFDLRPLPGMDPQVLRAAIRQKLEPIAERHQVKIDYAPLFPEVP 299 Query: 304 GYECPPNHQLVEVVEKLLGAKTEVVNYCTEAPFIQTL-CPTLVLGPGSINQAHQPDEYLE 362 +E + +LV V E+L G + E V + TEAP++Q L C TLVLGPG I AHQP EYLE Sbjct: 300 PFEQAEDAELVRVAERLTGHRAEAVAFGTEAPYLQRLGCETLVLGPGDIACAHQPGEYLE 359 Query: 363 TRFIKPTRELITQVIHHFC 381 ++PT +L+ Q+I H+C Sbjct: 360 MSRLQPTVQLLRQLIGHYC 378 Lambda K H 0.320 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 471 Number of extensions: 16 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 383 Length of database: 385 Length adjustment: 30 Effective length of query: 353 Effective length of database: 355 Effective search space: 125315 Effective search space used: 125315 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate AO356_13080 AO356_13080 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))
../bin/blast/fastacmd -i /tmp/list.1097.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1097.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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