GapMind for Amino acid biosynthesis

 

Alignments for a candidate for thrB in Pseudomonas fluorescens FW300-N2C3

Align Homoserine kinase; HK; HSK; EC 2.7.1.39 (characterized)
to candidate AO356_11475 AO356_11475 homoserine kinase

Query= SwissProt::P29364
         (316 letters)



>FitnessBrowser__pseudo5_N2C3_1:AO356_11475
          Length = 316

 Score =  449 bits (1154), Expect = e-131
 Identities = 226/316 (71%), Positives = 252/316 (79%)

Query: 1   MSVFTPLERSTLEAFLAPYDLGRLRDFRGIAEGSENSNFFVSLEHGEFVLTLVERGPVQD 60
           MSVFTPL R  LE FLAPY LGRL DF+GIA GSEN+NFF+SLE GEFVLTLVERGPVQ+
Sbjct: 1   MSVFTPLARPELETFLAPYGLGRLLDFQGIAAGSENTNFFISLEQGEFVLTLVERGPVQE 60

Query: 61  LPFFIELLDVLHEDGLPVPYALRTRDGEALRRLEGKPALLQPRLAGRHERQPNAHHCQEV 120
           +PFFIELLDVLH+  LPVPYALRT DG ALR L GKPALLQPRLAG+H +Q NA HC +V
Sbjct: 61  MPFFIELLDVLHDADLPVPYALRTTDGVALRELAGKPALLQPRLAGKHIKQANAQHCAQV 120

Query: 121 GDLLGHLHAATRGRILERPSDRGLPWMLEQGANLAPRLPEQARALLAPALAEIAALDAER 180
           G+LL HLH ATR  +++R +DRGL WM E+GA L   L    R LL  AL EI+      
Sbjct: 121 GELLAHLHLATRDNMIKRKTDRGLDWMQEEGAKLLSHLDTAPRQLLEAALDEISLKKVGI 180

Query: 181 PALPRANLHADLFRDNVLFDGPHLAGLIDFYNACSGWMLYDLAITLNDWCSNTDGSLDPA 240
            ALPRAN+HADLFRDN +F+G HL GLIDFYNACSG MLYD+AI LNDWCS+ +G LD  
Sbjct: 181 LALPRANIHADLFRDNAMFEGTHLTGLIDFYNACSGPMLYDVAIALNDWCSDDNGVLDGP 240

Query: 241 RARALLAAYANRRPFTALEAEHWPSMLRVACVRFWLSRLIAAEAFAGQDVLIHDPAEFEI 300
           RARALL AYA  RPFTA EA+ WP+MLRVACVRFWLSRLIAAE+FAGQDVLIHDP EF+ 
Sbjct: 241 RARALLGAYAALRPFTAAEAQLWPTMLRVACVRFWLSRLIAAESFAGQDVLIHDPMEFQQ 300

Query: 301 RLAQRQNVEIHLPFAL 316
           RLAQRQ V   LPFAL
Sbjct: 301 RLAQRQTVHALLPFAL 316


Lambda     K      H
   0.324    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 395
Number of extensions: 7
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 316
Length adjustment: 27
Effective length of query: 289
Effective length of database: 289
Effective search space:    83521
Effective search space used:    83521
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)

Align candidate AO356_11475 AO356_11475 (homoserine kinase)
to HMM TIGR00938 (thrB: homoserine kinase (EC 2.7.1.39))

Software error:

../bin/blast/fastacmd -i /tmp/list.31672.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31672.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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