Align Homoserine kinase; HK; HSK; EC 2.7.1.39 (characterized)
to candidate AO356_11475 AO356_11475 homoserine kinase
Query= SwissProt::P29364 (316 letters) >FitnessBrowser__pseudo5_N2C3_1:AO356_11475 Length = 316 Score = 449 bits (1154), Expect = e-131 Identities = 226/316 (71%), Positives = 252/316 (79%) Query: 1 MSVFTPLERSTLEAFLAPYDLGRLRDFRGIAEGSENSNFFVSLEHGEFVLTLVERGPVQD 60 MSVFTPL R LE FLAPY LGRL DF+GIA GSEN+NFF+SLE GEFVLTLVERGPVQ+ Sbjct: 1 MSVFTPLARPELETFLAPYGLGRLLDFQGIAAGSENTNFFISLEQGEFVLTLVERGPVQE 60 Query: 61 LPFFIELLDVLHEDGLPVPYALRTRDGEALRRLEGKPALLQPRLAGRHERQPNAHHCQEV 120 +PFFIELLDVLH+ LPVPYALRT DG ALR L GKPALLQPRLAG+H +Q NA HC +V Sbjct: 61 MPFFIELLDVLHDADLPVPYALRTTDGVALRELAGKPALLQPRLAGKHIKQANAQHCAQV 120 Query: 121 GDLLGHLHAATRGRILERPSDRGLPWMLEQGANLAPRLPEQARALLAPALAEIAALDAER 180 G+LL HLH ATR +++R +DRGL WM E+GA L L R LL AL EI+ Sbjct: 121 GELLAHLHLATRDNMIKRKTDRGLDWMQEEGAKLLSHLDTAPRQLLEAALDEISLKKVGI 180 Query: 181 PALPRANLHADLFRDNVLFDGPHLAGLIDFYNACSGWMLYDLAITLNDWCSNTDGSLDPA 240 ALPRAN+HADLFRDN +F+G HL GLIDFYNACSG MLYD+AI LNDWCS+ +G LD Sbjct: 181 LALPRANIHADLFRDNAMFEGTHLTGLIDFYNACSGPMLYDVAIALNDWCSDDNGVLDGP 240 Query: 241 RARALLAAYANRRPFTALEAEHWPSMLRVACVRFWLSRLIAAEAFAGQDVLIHDPAEFEI 300 RARALL AYA RPFTA EA+ WP+MLRVACVRFWLSRLIAAE+FAGQDVLIHDP EF+ Sbjct: 241 RARALLGAYAALRPFTAAEAQLWPTMLRVACVRFWLSRLIAAESFAGQDVLIHDPMEFQQ 300 Query: 301 RLAQRQNVEIHLPFAL 316 RLAQRQ V LPFAL Sbjct: 301 RLAQRQTVHALLPFAL 316 Lambda K H 0.324 0.140 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 395 Number of extensions: 7 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 316 Length of database: 316 Length adjustment: 27 Effective length of query: 289 Effective length of database: 289 Effective search space: 83521 Effective search space used: 83521 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 48 (23.1 bits)
Align candidate AO356_11475 AO356_11475 (homoserine kinase)
to HMM TIGR00938 (thrB: homoserine kinase (EC 2.7.1.39))
../bin/blast/fastacmd -i /tmp/list.31672.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31672.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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