Align Monofunctional chorismate mutase; EC 5.4.99.5 (characterized)
to candidate AO356_09710 AO356_09710 chorismate mutase
Query= SwissProt::Q9HU05 (185 letters) >FitnessBrowser__pseudo5_N2C3_1:AO356_09710 Length = 187 Score = 90.9 bits (224), Expect = 1e-23 Identities = 70/177 (39%), Positives = 91/177 (51%), Gaps = 11/177 (6%) Query: 10 LLALLLLQGPLLQAQPLSPALQQLLSLSSQRLQLADQVAQSKAQSGKAVQDSPREEQQLQ 69 L A LL + P AL LL+ +RL +ADQVA SK SGK V+D RE + + Sbjct: 11 LSAALLASTAAAASTPAPEALTPLLNAIGERLAIADQVALSKWDSGKPVEDRQREREVIA 70 Query: 70 MLAGQAGSHGVGAEQVRLLFAAQIEANKLVQYRLLSRPLPDAGQAVDLER------IRSR 123 QA ++ + E V FAAQIEANK+VQY LS D G+A DL R IR + Sbjct: 71 AAVAQAPAYKLSNETVEAFFAAQIEANKMVQYINLSDWALD-GKAPDLPRPDLVGQIRPQ 129 Query: 124 LNQLNLELLRGYAPALAELRVDDCRPRLNQALQRQVRVDRLDELHAIALSRAAGDLC 180 L++L LL+ A A R D P+ Q L D+ +H +AL RA +LC Sbjct: 130 LDRLQKRLLQQLAD-FAPYRTD---PQCPQWLAHATHHDKQHPVHRLALIRATAELC 182 Lambda K H 0.320 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 88 Number of extensions: 4 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 185 Length of database: 187 Length adjustment: 20 Effective length of query: 165 Effective length of database: 167 Effective search space: 27555 Effective search space used: 27555 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 44 (21.6 bits)
Align candidate AO356_09710 AO356_09710 (chorismate mutase)
to HMM TIGR01806 (putative chorismate mutase (EC 5.4.99.5))
../bin/blast/fastacmd -i /tmp/list.15110.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15110.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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