Align isochorismate lyase (EC 4.2.99.21) (characterized)
to candidate AO356_24185 AO356_24185 isochorismate-pyruvate lyase
Query= BRENDA::Q51507 (101 letters) >FitnessBrowser__pseudo5_N2C3_1:AO356_24185 Length = 106 Score = 88.6 bits (218), Expect = 2e-23 Identities = 38/91 (41%), Positives = 59/91 (64%) Query: 4 PEDCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFKASEAAIPAPERVAAMLPERAR 63 P +C + DIR ID +D +++ LG+R YV AAS+FK S ++ APER AML R Sbjct: 9 PSECVSMEDIRGEIDALDQAVIKLLGKRFQYVLAASKFKTSATSVRAPERFKAMLATRRE 68 Query: 64 WAEENGLDAPFVEGLFAQIIHWYIAEQIKYW 94 WAE GL +E +++ +++ +IAE++K+W Sbjct: 69 WAEAEGLSPDAIEKMYSDLVNHFIAEEMKHW 99 Lambda K H 0.322 0.135 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 43 Number of extensions: 2 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 101 Length of database: 106 Length adjustment: 11 Effective length of query: 90 Effective length of database: 95 Effective search space: 8550 Effective search space used: 8550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 40 (20.0 bits)
Align candidate AO356_24185 AO356_24185 (isochorismate-pyruvate lyase)
to HMM PF01817 (CM_2)
../bin/blast/fastacmd -i /tmp/list.20053.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20053.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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