Align Carbamoyl-phosphate synthase small chain, chloroplastic; Carbamoyl-phosphate synthetase glutamine chain; Protein VENOSA 6; EC 6.3.5.5 (characterized)
to candidate Pf6N2E2_3365 Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Query= SwissProt::Q9LVW7 (430 letters) >FitnessBrowser__pseudo6_N2E2:Pf6N2E2_3365 Length = 378 Score = 339 bits (870), Expect = 7e-98 Identities = 175/376 (46%), Positives = 241/376 (64%), Gaps = 11/376 (2%) Query: 58 ARLVLEDGSIWPAKSFGAPGTRIAELVFNTSLTGYQEILTDPSYAGQFVLMTNPQIGNTG 117 A L L DGSI+ ++ GA G + E+VFNT++TGYQEILTDPSYA Q V +T P IGNTG Sbjct: 5 AILALADGSIFRGEAIGADGQTVGEVVFNTAMTGYQEILTDPSYAQQIVTLTYPHIGNTG 64 Query: 118 VNPDDEESGQCFLTGLVIRNLSISTSNWRCTKTLADYLTERDIMGVYDLDTRAITRRLRE 177 P+D ES + + GLVIR+L + SNWR T +L+DYL +++ + +DTR +TR LRE Sbjct: 65 TTPEDAESDRVWSAGLVIRDLPLVASNWRNTMSLSDYLKANNVVAIAGIDTRRLTRILRE 124 Query: 178 DGSLIGVLSTEQSKTDDELLQMSRSW-DIVGIDLISDVSCKSPYEWVDKTNAEWDFNTNS 236 G+ G + + +++ + ++ + + G+DL VS K YEW + WD T+S Sbjct: 125 KGAQNGCIMAGDNISEEAAIAAAQGFPGLKGMDLAKVVSTKKQYEW---RSTVWDLKTDS 181 Query: 237 R-----DGKSYKVIAYDFGIKQNILRRLSSYGCQITVVPSTFPAAEALKMNPDGILFSNG 291 Y V+AYD+G+K NILR L GC++TVVP+ PAA+ L + PDG+ SNG Sbjct: 182 HATIEASELPYHVVAYDYGVKLNILRMLVERGCRVTVVPAQTPAADVLALKPDGVFLSNG 241 Query: 292 PGDPSAVPYAVETVKELL-GKVPVYGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNNR 350 PGDP YA++ +K++L ++PV+GIC+GHQLL A G KT KM GHHG NHPV++ Sbjct: 242 PGDPEPCDYAIQAIKDVLETEIPVFGICLGHQLLALASGAKTLKMGHGHHGANHPVQDLD 301 Query: 351 TGQVEISAQNHNYAVDPASLPGGVEVTHVNLNDGSCAGLSFPEMNVMSLQYHPEASPGPH 410 TG V I++QNH +AVD A+LP V H +L DG+ G+ + + S Q HPEASPGP+ Sbjct: 302 TGVVMITSQNHGFAVDEATLPANVRAIHKSLFDGTLQGIERTDKSAFSFQGHPEASPGPN 361 Query: 411 DSDNAFREFI-ELMKR 425 D F FI E+ KR Sbjct: 362 DVAPLFDRFISEMAKR 377 Lambda K H 0.316 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 443 Number of extensions: 12 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 2 Number of HSP's successfully gapped: 1 Length of query: 430 Length of database: 378 Length adjustment: 31 Effective length of query: 399 Effective length of database: 347 Effective search space: 138453 Effective search space used: 138453 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate Pf6N2E2_3365 (Carbamoyl-phosphate synthase small chain (EC 6.3.5.5))
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.7795.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.7795.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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