GapMind for Amino acid biosynthesis

 

Alignments for a candidate for hisC in Pseudomonas fluorescens FW300-N2E2

Align Histidinol-phosphate aminotransferase; EC 2.6.1.9; Imidazole acetol-phosphate transaminase (uncharacterized)
to candidate Pf6N2E2_3251 Histidinol-phosphate aminotransferase (EC 2.6.1.9)

Query= curated2:Q48ED0
         (350 letters)



>FitnessBrowser__pseudo6_N2E2:Pf6N2E2_3251
          Length = 350

 Score =  587 bits (1514), Expect = e-172
 Identities = 291/350 (83%), Positives = 314/350 (89%)

Query: 1   MSKFWSPFVSGLVPYVPGEQPKLTRLVKLNTNENPYGPSPKAVEAMRAALTDDLRLYPDP 60
           MSKFWSPFV  LVPYVPGEQPKLTRLVKLNTNENPYGPSPKA+ AM+  L D+LRLYPDP
Sbjct: 1   MSKFWSPFVKNLVPYVPGEQPKLTRLVKLNTNENPYGPSPKALAAMQTELNDNLRLYPDP 60

Query: 61  NSDLLKHAVADYYKVQPNQVFLGNGSDEVLAHIFHALFQHDASLLFPDISYSFYPVYCGL 120
           NSDLLK AVA YY VQ NQVFLGNGSDEVLAHIFH L QHD  LLFPDISYSFYPVYCGL
Sbjct: 61  NSDLLKGAVARYYGVQSNQVFLGNGSDEVLAHIFHGLLQHDQPLLFPDISYSFYPVYCGL 120

Query: 121 YGIDYEMIALDDQFQIRAEDYAKPNAGIIFPNPNAPTGCLLGLDKVEQIIKASPDSVVVV 180
           YGI ++ + LD QFQI   DYAKPN GIIFPNPNAPTGCLL L+ VEQI+KA+PDSVVVV
Sbjct: 121 YGIQFDAVPLDAQFQIDPADYAKPNGGIIFPNPNAPTGCLLALEAVEQILKANPDSVVVV 180

Query: 181 DEAYIDFGGETAITLVDRYPNLLVTQTLSKSRSLAGLRVGLAVGHSDLIEALERVKNSFN 240
           DEAYIDFGGETAI+LVDRYPNLLVTQTLSKSRSLAGLRVGLAVGH +LIEALER+KNSFN
Sbjct: 181 DEAYIDFGGETAISLVDRYPNLLVTQTLSKSRSLAGLRVGLAVGHPELIEALERIKNSFN 240

Query: 241 SYPLDRMANVGGAAAFEDREHFESTRNKVIESREALVEQLQGKGFEVLPSAANFIFARHP 300
           SYPLDR+ANVGGAAAF+DRE+F+ T   VIE RE +V QLQ KGFEVLPSAANFIFARHP
Sbjct: 241 SYPLDRLANVGGAAAFDDREYFDRTCRLVIEHREWVVAQLQAKGFEVLPSAANFIFARHP 300

Query: 301 QHDAAALAAKLREQGVIVRHFKQQRIAQFLRISIGTPEQHQALLEGLSDI 350
           +HDAA LAAKLREQGVIVRHFKQ+RIAQFLRISIGTPEQ+QAL+E L ++
Sbjct: 301 RHDAAGLAAKLREQGVIVRHFKQERIAQFLRISIGTPEQNQALIEALGEL 350


Lambda     K      H
   0.319    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 553
Number of extensions: 13
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 350
Length adjustment: 29
Effective length of query: 321
Effective length of database: 321
Effective search space:   103041
Effective search space used:   103041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate Pf6N2E2_3251 (Histidinol-phosphate aminotransferase (EC 2.6.1.9))
to HMM TIGR01141 (hisC: histidinol-phosphate transaminase (EC 2.6.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.2711.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.2711.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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