Align ATP phosphoribosyltransferase; ATP-PRT; ATP-PRTase; EC 2.4.2.17 (uncharacterized)
to candidate Pf6N2E2_3253 ATP phosphoribosyltransferase (EC 2.4.2.17)
Query= curated2:Q6FEC9 (228 letters) >FitnessBrowser__pseudo6_N2E2:Pf6N2E2_3253 Length = 211 Score = 275 bits (704), Expect = 4e-79 Identities = 139/207 (67%), Positives = 168/207 (81%) Query: 22 LTLALSKGRILKETLPLLEAAGINLLEDPEKSRKLIFPTTHQKVRILILRASDVPTYVEN 81 LT+ALSKGRIL +TLPLL AGI E+P+KSRKLI PTT VR+LI+RA+DVPTYVE+ Sbjct: 2 LTIALSKGRILDDTLPLLAEAGIVPTENPDKSRKLIIPTTQADVRLLIVRATDVPTYVEH 61 Query: 82 GAADFGVAGKDVLMEHGAQHVYELLDLKIANCKLMTAGKVGMQHPKGRLKIATKYVNLTR 141 GAAD GVAGKDVLME+G Q +YE LDL+IA CKLMTAGKVG PKGRL++ATK+VN+ + Sbjct: 62 GAADLGVAGKDVLMEYGGQGLYEPLDLQIARCKLMTAGKVGAPEPKGRLRVATKFVNIAK 121 Query: 142 QYYASLGEQVDVIKLYGSMELAPLVGLGDYIVDVVDTGNTLRANGLEPLEEIMKVSSRLI 201 +YYA G QVD+IKLYGSMELAPL+GL D I+DVVDTGNTLRANGLEP + I ++SRLI Sbjct: 122 RYYAEQGRQVDIIKLYGSMELAPLIGLADKIIDVVDTGNTLRANGLEPQDFIADITSRLI 181 Query: 202 VNKASFKRKQALLDPILAQVEEAVNQR 228 VNKAS K + A + ++ + +AV R Sbjct: 182 VNKASMKMQHARIQALIDTLRKAVESR 208 Lambda K H 0.318 0.137 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 213 Number of extensions: 4 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 228 Length of database: 211 Length adjustment: 22 Effective length of query: 206 Effective length of database: 189 Effective search space: 38934 Effective search space used: 38934 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 45 (21.9 bits)
Align candidate Pf6N2E2_3253 (ATP phosphoribosyltransferase (EC 2.4.2.17))
to HMM TIGR00070 (hisG: ATP phosphoribosyltransferase (EC 2.4.2.17))
../bin/blast/fastacmd -i /tmp/list.28817.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.28817.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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