Align Monofunctional chorismate mutase; EC 5.4.99.5 (characterized)
to candidate Pf6N2E2_3822 Periplasmic chorismate mutase I precursor (EC 5.4.99.5)
Query= SwissProt::Q9HU05 (185 letters) >FitnessBrowser__pseudo6_N2E2:Pf6N2E2_3822 Length = 187 Score = 85.1 bits (209), Expect = 7e-22 Identities = 69/177 (38%), Positives = 92/177 (51%), Gaps = 12/177 (6%) Query: 11 LALLLLQGPLLQAQPLSP-ALQQLLSLSSQRLQLADQVAQSKAQSGKAVQDSPREEQQLQ 69 L+ LL A +P AL LL+ +RL L DQVA SK S K V+D RE + + Sbjct: 11 LSAALLASTAEAASARAPEALTPLLNAIGERLALGDQVALSKWDSHKPVEDRQREREVIA 70 Query: 70 MLAGQAGSHGVGAEQVRLLFAAQIEANKLVQYRLLSRPLPDAGQAVDLER------IRSR 123 QA ++ + E V FAAQIEANK+VQY LS + G+A DL R IR + Sbjct: 71 AAVAQAPAYKLSGETVEAFFAAQIEANKMVQYINLSDWALE-GKAPDLPRPDLVGEIRPQ 129 Query: 124 LNQLNLELLRGYAPALAELRVDDCRPRLNQALQRQVRVDRLDELHAIALSRAAGDLC 180 L++L LL+ A A R D P+ Q L R ++ +H +AL RA G+LC Sbjct: 130 LDRLQKRLLQQLAD-FAPYRTD---PQCPQWLARATHHNKQHPVHRLALIRATGELC 182 Lambda K H 0.320 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 79 Number of extensions: 4 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 185 Length of database: 187 Length adjustment: 20 Effective length of query: 165 Effective length of database: 167 Effective search space: 27555 Effective search space used: 27555 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 44 (21.6 bits)
Align candidate Pf6N2E2_3822 (Periplasmic chorismate mutase I precursor (EC 5.4.99.5))
to HMM TIGR01806 (putative chorismate mutase (EC 5.4.99.5))
../bin/blast/fastacmd -i /tmp/list.13402.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13402.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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