Align acetylornithine deacetylase (EC 3.5.1.16) (characterized)
to candidate Pf6N2E2_1339 Acetylornithine deacetylase (EC 3.5.1.16)
Query= ecocyc::ACETYLORNDEACET-MONOMER (383 letters) >FitnessBrowser__pseudo6_N2E2:Pf6N2E2_1339 Length = 394 Score = 195 bits (496), Expect = 2e-54 Identities = 133/381 (34%), Positives = 191/381 (50%), Gaps = 15/381 (3%) Query: 13 RALIATPSISATEEALDQSNADLITLLADWFKDLGFNVEVQPVPGTRNKFNMLASIGQGA 72 RAL+A AT SN LI + D+ + LG N E+ R K N+LASIG Sbjct: 12 RALLAELVSFATVSR--DSNLALIEFVRDYLQGLGVNSELI-YNAERTKANLLASIGPAV 68 Query: 73 -GGLLLAGHTDTVPFDDGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILDALRDVDVTK 131 GG++L+GHTD VP D WT DPF LTE DGK +G GTADMKG+ A +L A+ + Sbjct: 69 PGGVVLSGHTDVVPVDGQAWTVDPFCLTEMDGKWFGRGTADMKGYLASVLAAVPVFLSSP 128 Query: 132 LKKPLYILATADEETSMAGARYFAETTALR---PDCAIIGEPTSLQPVRAHKGHISNAIR 188 L++P+++ + DEE G E R P +IGEPT L+PV HKG ++ Sbjct: 129 LRRPVHLAFSYDEEVGCLGVHSLLEVLVRRIAQPALCLIGEPTQLRPVLGHKGKLAMRCH 188 Query: 189 IQGQSGHSSDPARGVNAIELMHDAIGHILQLRDNLKE-RYHYEAFTVPYPTLNLGHIHGG 247 ++G + HS+ GVNAIE IG + ++ L E H F T+ +G +HGG Sbjct: 189 VRGAACHSAYAPYGVNAIEQAARLIGRLGEIGAQLAEPSRHDPRFDPACSTVQVGVVHGG 248 Query: 248 DASNRICACCELHMDIRPLPG----MTLNELNGLLNDALAPVSERWPGRLTVD-ELHPPI 302 A N + A C ++R LP + + +L G L P + G + E Sbjct: 249 TALNIVPADCRFDFEVRALPDFDPLVVVEQLQGYAEQTLLPAMQAVAGDTAIRFEPLSAY 308 Query: 303 PGYECPPNHQLVEVVEKLLGAKT-EVVNYCTEAP-FIQTLCPTLVLGPGSINQAHQPDEY 360 PG P+ ++ +L G+ V + TE F Q PT+V GPGS++Q H+PDEY Sbjct: 309 PGLATSPDSAAARLIAQLCGSDAFGTVAFGTEGGLFHQAGVPTVVCGPGSMDQGHKPDEY 368 Query: 361 LETRFIKPTRELITQVIHHFC 381 + + L+ ++ + C Sbjct: 369 VSVEQMAACDRLMDRLASYLC 389 Lambda K H 0.320 0.139 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 378 Number of extensions: 20 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 383 Length of database: 394 Length adjustment: 30 Effective length of query: 353 Effective length of database: 364 Effective search space: 128492 Effective search space used: 128492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate Pf6N2E2_1339 (Acetylornithine deacetylase (EC 3.5.1.16))
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))
../bin/blast/fastacmd -i /tmp/list.19870.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.19870.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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