GapMind for Amino acid biosynthesis

 

Alignments for a candidate for trpD_1 in Pseudomonas fluorescens FW300-N2E2

Align Anthranilate synthase component 2; AS; ASII; Anthranilate synthase, GATase component; Anthranilate synthase, glutamine amidotransferase component; EC 4.1.3.27 (characterized)
to candidate Pf6N2E2_4824 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)

Query= SwissProt::P00901
         (198 letters)



>FitnessBrowser__pseudo6_N2E2:Pf6N2E2_4824
          Length = 197

 Score =  365 bits (936), Expect = e-106
 Identities = 176/197 (89%), Positives = 188/197 (95%)

Query: 2   LLMMIDNYDSFTYNVVQYLGELGAEVKVIRNDEMTIAQIEALNPERIVVSPGPCTPSEAG 61
           +L+MIDNYDSFTYNVVQYLGELG+EVKV+RNDE+TIA+IEAL PERIVVSPGPCTP+EAG
Sbjct: 1   MLLMIDNYDSFTYNVVQYLGELGSEVKVVRNDELTIAEIEALKPERIVVSPGPCTPTEAG 60

Query: 62  VSIEAILHFAGKLPILGVCLGHQSIGQAFGGDVVRARQVMHGKTSPVHHRDLGVFTGLNN 121
           +SI+AI +FAGKLPILGVCLGHQSIGQAFGGDVVRARQVMHGKTSPV H D GVF GLN+
Sbjct: 61  ISIDAIKYFAGKLPILGVCLGHQSIGQAFGGDVVRARQVMHGKTSPVFHEDKGVFEGLNH 120

Query: 122 PLTVTRYHSLVVKRETLPDCLEVTAWTAHEDGSVDEIMGLRHKTLNIEGVQFHPESILTE 181
           PLTVTRYHSLVVKRETLPDCLE+TAWT  EDGSVDEIMGLRHKTLNIEGVQFHPESILTE
Sbjct: 121 PLTVTRYHSLVVKRETLPDCLELTAWTQFEDGSVDEIMGLRHKTLNIEGVQFHPESILTE 180

Query: 182 QGHELFANFLKQTGGRR 198
           QGHELFANFLKQTGG R
Sbjct: 181 QGHELFANFLKQTGGTR 197


Lambda     K      H
   0.320    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 239
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 197
Length adjustment: 20
Effective length of query: 178
Effective length of database: 177
Effective search space:    31506
Effective search space used:    31506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)

Align candidate Pf6N2E2_4824 (Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85))
to HMM TIGR00566 (glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase)

Software error:

../bin/blast/fastacmd -i /tmp/list.31816.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31816.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.