Align Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EPSP phospholyase; EC 4.2.3.5 (characterized)
to candidate 206322 DVU0894 chorismate synthase
Query= SwissProt::P12008 (361 letters) >MicrobesOnline__882:206322 Length = 354 Score = 386 bits (991), Expect = e-112 Identities = 191/348 (54%), Positives = 252/348 (72%), Gaps = 1/348 (0%) Query: 1 MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHDLDRRRPGTSRYTTQRR 60 M+GNT+G+LFR+TT+GESHG LG ++DG P GI L EA +Q +LD RRPG + +T R+ Sbjct: 1 MSGNTLGRLFRLTTYGESHGAGLGGVIDGCPAGIALDEAVIQRELDLRRPGGNSASTTRQ 60 Query: 61 EPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVFRPGHADYTYEQKYGLRDY 120 EPD+V++LSGVFEGVTTGT I +EN DQRS+DY I ++RPGHAD+TY+ K+G+RDY Sbjct: 61 EPDRVRLLSGVFEGVTTGTPIAFHVENVDQRSRDYGEIARLYRPGHADFTYDAKFGVRDY 120 Query: 121 RGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQMGDIPLDIKDWSQVEQNPFFC 180 RGGGR+S RET RVA GAIA+ LA + GI +R ++G +P D+ D + +Q PFF Sbjct: 121 RGGGRASGRETLSRVAGGAIAQALLA-RHGIAVRAFTVELGGVPADLVDVAGAQQRPFFS 179 Query: 181 PDPDKIDALDELMRALKKEGDSIGAKVTVVASGVPAGLGEPVFDRLDADIAHALMSINAV 240 PDPD ++A ++++R +K EGD++G V V A+GVPAGLGEPVFD+LDA +A+ALMS+ AV Sbjct: 180 PDPDVVEAWEDMVRTVKGEGDTLGGIVQVEATGVPAGLGEPVFDKLDAVLAYALMSVGAV 239 Query: 241 KGVEIGDGFDVVALRGSQNRDEITKDGFQSNHAGGILGGISSGQQIIAHMALKPTSSITV 300 KGVE+G GF+ + GS N D I GF +NHAGGILGGIS+G+ I+ A+KP SI Sbjct: 240 KGVEVGAGFEAARMHGSDNNDPIVPSGFFTNHAGGILGGISNGETIVLRAAVKPIPSIAQ 299 Query: 301 PGRTINRFGEEVEMITKGRHDPCVGIRAVPIAEAMLAIVLMDHLLRQR 348 TI+R G+ + GRHD R VP+ +AM A+VL D LL QR Sbjct: 300 EQITIDRDGKPSALFIAGRHDISAIPRIVPVLKAMTALVLADMLLMQR 347 Lambda K H 0.319 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 397 Number of extensions: 18 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 361 Length of database: 354 Length adjustment: 29 Effective length of query: 332 Effective length of database: 325 Effective search space: 107900 Effective search space used: 107900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate 206322 DVU0894 (chorismate synthase)
to HMM TIGR00033 (aroC: chorismate synthase (EC 4.2.3.5))
../bin/blast/fastacmd -i /tmp/list.20294.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.20294.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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