Align Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 (uncharacterized)
to candidate 209045 DVU0115 shikimate 5-dehydrogenase
Query= curated2:Q30VD9 (279 letters) >MicrobesOnline__882:209045 Length = 301 Score = 296 bits (759), Expect = 3e-85 Identities = 156/271 (57%), Positives = 185/271 (68%), Gaps = 2/271 (0%) Query: 5 RIPRQLYGIIGYPLGHSMSPLLHNWGFELLGEQAAYMAFPVAPEKLAEFICCARMLPVSG 64 RIP +LYGI+G+PLGH++SPLLHNWGF L A YMA+PV P + A F+ R LPV G Sbjct: 31 RIPERLYGIVGHPLGHTLSPLLHNWGFALHSLPAVYMAWPVPPGRFASFMEAVRTLPVHG 90 Query: 65 LSVTIPHKQAVMPLLDAVTPRAQAAGAVNTLFYDDGKLTGDNTDVYGFLHPLDSCGTAHA 124 SVTIPHK+ + L D VT RA+A GAVNTLF +DG + G+NTDV GFL PL + G Sbjct: 91 ASVTIPHKEEALRLCDRVTDRARAVGAVNTLFLEDGVVCGENTDVTGFLAPLRARGVRID 150 Query: 125 AALVLGAGGAANAVLAALTARGMCNVTVTNRNGDRARILAERFGVRCVAWEERHAVDADL 184 ALVLGAGGAA AVLA L G+ V ++NR D+A LA FG V W+ER + A L Sbjct: 151 EALVLGAGGAARAVLAGLVELGVRRVRISNRTHDKAMELAGAFGADVVPWDERGSAAAGL 210 Query: 185 VVNTTPLGMAGDRQAQTPLDPAFFSSRPAGLAYDLIYNPAQTFFLASAQAAGWRVLNGLD 244 VVNTTP GM G R ++PL FS R G+AYDL+YNP T FLA A+AAGW +GL Sbjct: 211 VVNTTPCGMQGARMGESPLPEGAFSGR--GMAYDLVYNPLTTRFLADARAAGWETQDGLG 268 Query: 245 MFVAQGAEQFRIWRGRELPFAQARALIADAL 275 MFV QG EQFRIW G +LP AR LIA+AL Sbjct: 269 MFVEQGREQFRIWTGLDLPAEGARRLIAEAL 299 Lambda K H 0.324 0.137 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 247 Number of extensions: 9 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 279 Length of database: 301 Length adjustment: 26 Effective length of query: 253 Effective length of database: 275 Effective search space: 69575 Effective search space used: 69575 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 48 (23.1 bits)
Align candidate 209045 DVU0115 (shikimate 5-dehydrogenase)
to HMM TIGR00507 (aroE: shikimate dehydrogenase (EC 1.1.1.25))
../bin/blast/fastacmd -i /tmp/list.16889.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16889.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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