Align glutamyl-tRNAGln amidotransferase subunit A (EC 6.3.5.7) (characterized)
to candidate 206234 DVU0808 glutamyl-tRNA(Gln) amidotransferase, A subunit
Query= metacyc::MONOMER-13955 (485 letters) >MicrobesOnline__882:206234 Length = 489 Score = 483 bits (1243), Expect = e-141 Identities = 247/472 (52%), Positives = 335/472 (70%), Gaps = 6/472 (1%) Query: 8 ITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEAVDGRSE 67 + ++ + ++E++ D V + RI+ + ++ A L L E A A+ LD A G Sbjct: 9 LAAIRDALARREVRAEDAVLDCLARIETTEPRIDALLHLRAEAAIEEARALDAA--GPDA 66 Query: 68 HGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGKLNMDEF 127 L+G+P+ VKD + T G TT S+ILE+F P YDA VQRL++A A+ +GK NMDEF Sbjct: 67 SRPLWGVPVTVKDALTTAGTPTTAGSRILEDFVPFYDAFAVQRLREAGAIILGKNNMDEF 126 Query: 128 AMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPASFCG 187 AMGSSTENSAYK T+NPW+ VPGGSSGGSAA+VAAG+ SLG+DTGGSIRQPAS CG Sbjct: 127 AMGSSTENSAYKPTRNPWDTARVPGGSSGGSAASVAAGQCFASLGTDTGGSIRQPASLCG 186 Query: 188 VVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSANVDVPD 247 VGLKPTYGRVSRYGL+A+ SSLDQIGP+TRTVED A ++ I+G DK DST A+ V D Sbjct: 187 CVGLKPTYGRVSRYGLIAYGSSLDQIGPMTRTVEDAAIVMGVIAGHDKRDSTCADRPVED 246 Query: 248 FLSSLTG--DIKGLKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEEVSLPHSKYA 305 F ++L D+ G++I VP E+ GEG+ E S AAL LGAT +V+LPH+ + Sbjct: 247 FAAALASRHDLAGVRIGVPAEFWGEGLSPEVATSCRAALDAARDLGATIVDVALPHTPQS 306 Query: 306 LATYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNEVKRRIMLGTFA 365 +A YY+++S+EAS+NLAR+DG+RYG R ++L+DLY ++R+EG G+EV+RRIMLGT+ Sbjct: 307 IAAYYIVASAEASSNLARYDGVRYGKRAHAPEDLMDLYVRSRSEGLGDEVQRRIMLGTYV 366 Query: 366 LSSGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGENTKDPLTMYAND 425 LSSGYYDAYY+KA +VR I +D+ + F DVI GP +P A+ +G T DPL MY D Sbjct: 367 LSSGYYDAYYRKAAQVRRRILEDYRNAFATCDVICGPVSPVTAWPLGALTADPLQMYLMD 426 Query: 426 ILTIPVNLAGVPGISVPCGLA--DGLPLGLQIIGKHFDESTVYRVAHAFEQA 475 + T+ +NLAG+PG+S+P GL G+P+G+Q++G+ FDE+T+ V + +A Sbjct: 427 VFTLSLNLAGLPGLSLPVGLGTESGMPVGIQLLGRSFDEATLLSVGNVLSRA 478 Lambda K H 0.315 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 614 Number of extensions: 35 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 485 Length of database: 489 Length adjustment: 34 Effective length of query: 451 Effective length of database: 455 Effective search space: 205205 Effective search space used: 205205 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.6 bits)
Align candidate 206234 DVU0808 (glutamyl-tRNA(Gln) amidotransferase, A subunit)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.1867.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1867.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.