GapMind for Amino acid biosynthesis

 

Alignments for a candidate for ilvI in Desulfovibrio vulgaris Hildenborough

Align acetolactate synthase (subunit 1/2) (EC 2.2.1.6) (characterized)
to candidate 206819 DVU1377 acetolactate synthase, small subunit

Query= BRENDA::P9WKJ3
         (168 letters)



>MicrobesOnline__882:206819
          Length = 162

 Score =  151 bits (381), Expect = 6e-42
 Identities = 78/154 (50%), Positives = 111/154 (72%)

Query: 6   HTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQITK 65
           H LSVLVE++PGVL+RVA LFS RGFNIESL V  T  +  S MTI    ++   EQI K
Sbjct: 3   HVLSVLVENEPGVLSRVAGLFSGRGFNIESLNVAPTLDRGVSLMTISTRGDEQVKEQIVK 62

Query: 66  QLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVIEAVNLFRANVIDVSPESLTV 125
           QL KL+ VIK+V+ +   +V RE+ ++KVQA+   R++V+   ++FR  V+DVS   LT+
Sbjct: 63  QLRKLVTVIKVVDFEGLATVEREMVIVKVQAEDTRRAEVLRIADIFRCKVVDVSLNDLTL 122

Query: 126 EATGNRGKLEALLRVLEPFGIREIAQSGMVSLSR 159
           EATG+ GK+EA++ +L+ FGI+E+A++G V+L R
Sbjct: 123 EATGDHGKIEAIISLLQKFGIKEVARTGTVALRR 156


Lambda     K      H
   0.315    0.131    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 97
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 162
Length adjustment: 18
Effective length of query: 150
Effective length of database: 144
Effective search space:    21600
Effective search space used:    21600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)

Align candidate 206819 DVU1377 (acetolactate synthase, small subunit)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.9450.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9450.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.