Align acetolactate synthase (subunit 1/2) (EC 2.2.1.6) (characterized)
to candidate 206819 DVU1377 acetolactate synthase, small subunit
Query= BRENDA::P9WKJ3 (168 letters) >MicrobesOnline__882:206819 Length = 162 Score = 151 bits (381), Expect = 6e-42 Identities = 78/154 (50%), Positives = 111/154 (72%) Query: 6 HTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQITK 65 H LSVLVE++PGVL+RVA LFS RGFNIESL V T + S MTI ++ EQI K Sbjct: 3 HVLSVLVENEPGVLSRVAGLFSGRGFNIESLNVAPTLDRGVSLMTISTRGDEQVKEQIVK 62 Query: 66 QLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVIEAVNLFRANVIDVSPESLTV 125 QL KL+ VIK+V+ + +V RE+ ++KVQA+ R++V+ ++FR V+DVS LT+ Sbjct: 63 QLRKLVTVIKVVDFEGLATVEREMVIVKVQAEDTRRAEVLRIADIFRCKVVDVSLNDLTL 122 Query: 126 EATGNRGKLEALLRVLEPFGIREIAQSGMVSLSR 159 EATG+ GK+EA++ +L+ FGI+E+A++G V+L R Sbjct: 123 EATGDHGKIEAIISLLQKFGIKEVARTGTVALRR 156 Lambda K H 0.315 0.131 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 97 Number of extensions: 3 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 168 Length of database: 162 Length adjustment: 18 Effective length of query: 150 Effective length of database: 144 Effective search space: 21600 Effective search space used: 21600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 43 (21.2 bits)
Align candidate 206819 DVU1377 (acetolactate synthase, small subunit)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.9450.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.9450.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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