GapMind for Amino acid biosynthesis

 

Alignments for a candidate for ilvI in Desulfovibrio vulgaris Hildenborough

Align Probable acetolactate synthase small subunit; EC 2.2.1.6; Acetohydroxy-acid synthase small subunit; AHAS; ALS (uncharacterized)
to candidate 209572 DVU0626 acetolactate synthase, small subunit

Query= curated2:O28555
         (159 letters)



>MicrobesOnline__882:209572
          Length = 159

 Score =  114 bits (284), Expect = 1e-30
 Identities = 57/158 (36%), Positives = 100/158 (63%), Gaps = 1/158 (0%)

Query: 1   MKHTIAVLVENKPGVLARVAGLFRRRGFNIESLTVGTTERDDLSRMTIVVEGDDKVVEQV 60
           MK+T++VLV N+ GV+A+   +FR+   N+ S++   TE  D+SR+ + VEG + + + V
Sbjct: 1   MKNTLSVLVRNQVGVVAQATEVFRQHNVNLNSISCAETEAFDVSRLMLTVEGQEHLFDAV 60

Query: 61  IKQLNKLIETIKVSEITESS-VERELCLIRVHAPPEKRGEIVELTNIFRARIVDVSRDSF 119
              L      ++V +++    V+REL L++V    E   +++++  +FRA +V + +++ 
Sbjct: 61  KADLASKDFVLEVEDLSARDLVDRELALVKVAVTRETTTQVMQVCEVFRATVVGMGQETM 120

Query: 120 IIEVTGDEDKVSAFIDLMRQYGIKELARTGKVAMVRGN 157
            +E+TGD  KV  FI L+R +GI+ LARTG VA+ RG+
Sbjct: 121 TLEITGDMRKVDGFIRLLRPFGIRSLARTGSVALARGD 158


Lambda     K      H
   0.319    0.137    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 77
Number of extensions: 4
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 159
Length adjustment: 17
Effective length of query: 142
Effective length of database: 142
Effective search space:    20164
Effective search space used:    20164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)

Align candidate 209572 DVU0626 (acetolactate synthase, small subunit)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.2673.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.2673.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.