Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate 208718 DVU3197 branched-chain amino acid aminotransferase
Query= reanno::BFirm:BPHYT_RS16285 (307 letters) >MicrobesOnline__882:208718 Length = 309 Score = 369 bits (946), Expect = e-107 Identities = 172/304 (56%), Positives = 224/304 (73%) Query: 1 MSMADRDGKIWMDGKLIDWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLQEHT 60 MSM + IW DGK + W +A +HVLTH LHYG+GVFEG+RAY+ ADG +A+FRL+EH Sbjct: 1 MSMVQKSETIWFDGKQVPWDEANVHVLTHALHYGVGVFEGIRAYRCADGSSAVFRLREHV 60 Query: 61 KRLLNSAKIFQMDVPFDHETLAAAQCEVVRENKLESCYLRPIIWVGSEKLGVSAKGNTIH 120 +RL +SAKI +M++PF + + A E ++ N+L Y+RP+ +VG+ +GV N + Sbjct: 61 QRLFSSAKILRMEIPFTEDAIFDAIVETLQRNRLAEGYIRPLSFVGAGAMGVYPGDNPVQ 120 Query: 121 VAIAAWPWGAYLGEDGIAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADG 180 IA WPWGAYLG + + KGIRVKTSSF RHHVN M +AKASG YVNS+LA EA ADG Sbjct: 121 TIIAVWPWGAYLGAEALEKGIRVKTSSFARHHVNAMMTKAKASGNYVNSVLAKMEAKADG 180 Query: 181 YDEALLLDVDGYVSEGSGENFFLVNNGKLYTPDLSSCLDGITRDTVITLARDAGIQVIEK 240 YDEAL+LDV G+VSE +GEN F+V NG + T L+S LDGITR++++TLARD G +V+E+ Sbjct: 181 YDEALMLDVSGFVSEATGENIFMVRNGVIKTTPLTSILDGITRNSLMTLARDLGYEVVEQ 240 Query: 241 RITRDEVYTCDEAFFTGTAAEVTPIRELDNRTIGSGARGPITEKLQSGFFDIVNGKSDKY 300 + TRDE+Y DEAFF GTAAEVTPIRE+D R IG G+ GP+T+ LQ +F V G + Y Sbjct: 241 QFTRDELYVADEAFFCGTAAEVTPIREVDRRVIGKGSAGPVTKHLQQEYFKAVKGDNPSY 300 Query: 301 ANWL 304 +WL Sbjct: 301 DHWL 304 Lambda K H 0.319 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 348 Number of extensions: 6 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 307 Length of database: 309 Length adjustment: 27 Effective length of query: 280 Effective length of database: 282 Effective search space: 78960 Effective search space used: 78960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate 208718 DVU3197 (branched-chain amino acid aminotransferase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))
../bin/blast/fastacmd -i /tmp/list.30536.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.30536.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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