Align LL-diaminopimelate aminotransferase (EC 2.6.1.83) (characterized)
to candidate 207114 DVU1655 aminotransferase, classes I and II
Query= BRENDA::O66630 (387 letters) >MicrobesOnline__882:207114 Length = 388 Score = 479 bits (1232), Expect = e-140 Identities = 237/385 (61%), Positives = 290/385 (75%), Gaps = 1/385 (0%) Query: 2 FEFSDRLKVLPPYLFAELDRKKQEKIEQGVDVIDLGVGDPDMPTPKPIVEAAKKALENPE 61 F+ +DRL LPPYLFA +D+ K E +GVD+I LG+GDPDM TP I+EA K+A+ P Sbjct: 4 FKLADRLATLPPYLFAGIDKVKAEVAARGVDIISLGIGDPDMATPGFIIEAMKEAIARPA 63 Query: 62 NHKYPSYVGKYEFRKAVADWYKRRFDVDLDPNTEVITLIGSKEGIAHFPLAFVNPGDIVL 121 NH+YPSYVG FR+ VA+WY RRF V LDP TEVI LIGSKEGIAHFP AF+NPGD+VL Sbjct: 64 NHQYPSYVGMLAFRQEVANWYDRRFGVSLDPATEVIGLIGSKEGIAHFPFAFINPGDLVL 123 Query: 122 CPDPAYPVYRIGAIFAGGTPYTVPLKEENNFLPDLDSIPEDVAKKAKIIWINYPNNPTSA 181 P YPVY I FAGG VPL EEN+FLPDLD+IPED K+AK+I++NYPNNPT+A Sbjct: 124 VCTPNYPVYHIATGFAGGEVQFVPLLEENDFLPDLDAIPEDTWKRAKMIFVNYPNNPTAA 183 Query: 182 PPTLEFYKKLVDWAKEYNVIIASDNAYSEIYTGQE-KPPSILQVPGAKDVAIEFHSLSKT 240 L FY+KLVD + ++VIIA D AY+EIY ++ +PPSIL VPGAKDVAIEFHSLSKT Sbjct: 184 TAPLGFYEKLVDICRRFDVIIAHDTAYTEIYYDEDNRPPSILSVPGAKDVAIEFHSLSKT 243 Query: 241 YNMTGWRIGMAVGNKELVAGLGKVKTNVDSGQFGAVQDAGIVALNLPEEEVEKIRDVYRE 300 YNMTGWR+GMAVGN LVAGLGK+K N+DSG F AVQ+A IVAL ++ ++R +YR+ Sbjct: 244 YNMTGWRVGMAVGNPTLVAGLGKIKENMDSGIFQAVQEASIVALRDGDDFCRELRGIYRQ 303 Query: 301 RKKIMTEALEKIGLEIYRSDYTFYLWIKVPEGYTSAEFVGRLIDEAGIVCTPGNGFGEYG 360 R+ + AL K G++ TFY+W +VP+G+TSA+FV R++ E G+V TPGNGFG G Sbjct: 304 RRDTVINALHKAGIQCRVPQATFYVWARVPQGHTSADFVTRVLQETGVVVTPGNGFGTPG 363 Query: 361 EGYFRISLTVPTERLLEAAERIKNL 385 EG+FRISLTV RL EA RI L Sbjct: 364 EGFFRISLTVDNARLEEAVSRIAKL 388 Lambda K H 0.317 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 508 Number of extensions: 20 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 387 Length of database: 388 Length adjustment: 30 Effective length of query: 357 Effective length of database: 358 Effective search space: 127806 Effective search space used: 127806 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate 207114 DVU1655 (aminotransferase, classes I and II)
to HMM TIGR03540 (LL-diaminopimelate aminotransferase (EC 2.6.1.83))
../bin/blast/fastacmd -i /tmp/list.2405.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.2405.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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