Align Aspartate kinase; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate 207382 DVU1913 aspartate kinase, monofunctional class
Query= SwissProt::Q88EI9 (411 letters) >MicrobesOnline__882:207382 Length = 408 Score = 435 bits (1118), Expect = e-126 Identities = 228/405 (56%), Positives = 300/405 (74%), Gaps = 1/405 (0%) Query: 1 MALIVQKFGGTSVGSIERIEQVAEKVKKHREAGDDLVVVLSAMSGETNRLIDLAKQITDQ 60 M ++VQKFGGTSV ++E ++QV KV RE G +VVVLSAMSGETNRL+ LA + + + Sbjct: 1 MRILVQKFGGTSVANLECMKQVRAKVLAARERGYKVVVVLSAMSGETNRLLALADEWSSE 60 Query: 61 PVPRELDVIVSTGEQVTIALLTMALIKRGVPAVSYTGNQVRILTDSSHNKARILQIDDQK 120 P P E D +V TGEQV+IAL +M L G+ A S+ G Q+ I+T + ARIL IDD + Sbjct: 61 PDPAETDALVVTGEQVSIALFSMLLKDSGIKARSFLGFQIPIVTSDTFGSARILSIDDSR 120 Query: 121 IRADLKEGRVVVVAGFQGVDEHGSITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYT 180 +RA+L+ V+VVAGFQG G +TTLGRGGSDT+ VALAAAL + EC+IYTDVDGVYT Sbjct: 121 LRAELETHDVLVVAGFQGCTADGRLTTLGRGGSDTSAVALAAALGSVECEIYTDVDGVYT 180 Query: 181 TDPRVVPQARRLEKITFEEMLEMASLGSKVLQIRSVEFAGKYNVPLRVLHSFKEGPGTLI 240 TDP + AR+L++IT++EMLEMAS+G+KVLQIRSVEFA KYNVP+ V +F + GTL+ Sbjct: 181 TDPNLCSTARKLDRITYDEMLEMASMGAKVLQIRSVEFAKKYNVPVHVRSTFTDTTGTLV 240 Query: 241 TIDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISASNIEVDMIVQNVAH 300 T E+ SME ++SGIA+++D+A++T+R VPD PGVA I P+S + + VDMIVQN + Sbjct: 241 T-QEDSSMEAVLVSGIAYDKDQARITLRSVPDRPGVAAAIFVPLSTNGVVVDMIVQNPSR 299 Query: 301 DNTTDFTFTVHRNEYEKAQSVLENTAREIGAREVIGDTKIAKVSIVGVGMRSHAGVASCM 360 + TD TFTV R + +K +++E E A EV+ D +AKVS +GVGMR+H+GVA+ Sbjct: 300 EGVTDMTFTVPRKDLKKTLTLMEGIREETEALEVLHDVSVAKVSAIGVGMRNHSGVAAKA 359 Query: 361 FEALAKESINIQMISTSEIKVSVVLEEKYLELAVRALHTAFDLDA 405 F AL KE+INI MISTSEIK++ ++EEKY ELAVR LH AF L + Sbjct: 360 FAALRKENINILMISTSEIKITCLIEEKYTELAVRVLHDAFGLSS 404 Lambda K H 0.316 0.133 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 448 Number of extensions: 19 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 411 Length of database: 408 Length adjustment: 31 Effective length of query: 380 Effective length of database: 377 Effective search space: 143260 Effective search space used: 143260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate 207382 DVU1913 (aspartate kinase, monofunctional class)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))
../bin/blast/fastacmd -i /tmp/list.28740.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.28740.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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