GapMind for Amino acid biosynthesis

 

Alignments for a candidate for asp-kinase in Desulfovibrio vulgaris Hildenborough

Align Aspartate kinase; Aspartokinase; EC 2.7.2.4 (characterized)
to candidate 207382 DVU1913 aspartate kinase, monofunctional class

Query= SwissProt::Q88EI9
         (411 letters)



>MicrobesOnline__882:207382
          Length = 408

 Score =  435 bits (1118), Expect = e-126
 Identities = 228/405 (56%), Positives = 300/405 (74%), Gaps = 1/405 (0%)

Query: 1   MALIVQKFGGTSVGSIERIEQVAEKVKKHREAGDDLVVVLSAMSGETNRLIDLAKQITDQ 60
           M ++VQKFGGTSV ++E ++QV  KV   RE G  +VVVLSAMSGETNRL+ LA + + +
Sbjct: 1   MRILVQKFGGTSVANLECMKQVRAKVLAARERGYKVVVVLSAMSGETNRLLALADEWSSE 60

Query: 61  PVPRELDVIVSTGEQVTIALLTMALIKRGVPAVSYTGNQVRILTDSSHNKARILQIDDQK 120
           P P E D +V TGEQV+IAL +M L   G+ A S+ G Q+ I+T  +   ARIL IDD +
Sbjct: 61  PDPAETDALVVTGEQVSIALFSMLLKDSGIKARSFLGFQIPIVTSDTFGSARILSIDDSR 120

Query: 121 IRADLKEGRVVVVAGFQGVDEHGSITTLGRGGSDTTGVALAAALKADECQIYTDVDGVYT 180
           +RA+L+   V+VVAGFQG    G +TTLGRGGSDT+ VALAAAL + EC+IYTDVDGVYT
Sbjct: 121 LRAELETHDVLVVAGFQGCTADGRLTTLGRGGSDTSAVALAAALGSVECEIYTDVDGVYT 180

Query: 181 TDPRVVPQARRLEKITFEEMLEMASLGSKVLQIRSVEFAGKYNVPLRVLHSFKEGPGTLI 240
           TDP +   AR+L++IT++EMLEMAS+G+KVLQIRSVEFA KYNVP+ V  +F +  GTL+
Sbjct: 181 TDPNLCSTARKLDRITYDEMLEMASMGAKVLQIRSVEFAKKYNVPVHVRSTFTDTTGTLV 240

Query: 241 TIDEEESMEQPIISGIAFNRDEAKLTIRGVPDTPGVAFKILGPISASNIEVDMIVQNVAH 300
           T  E+ SME  ++SGIA+++D+A++T+R VPD PGVA  I  P+S + + VDMIVQN + 
Sbjct: 241 T-QEDSSMEAVLVSGIAYDKDQARITLRSVPDRPGVAAAIFVPLSTNGVVVDMIVQNPSR 299

Query: 301 DNTTDFTFTVHRNEYEKAQSVLENTAREIGAREVIGDTKIAKVSIVGVGMRSHAGVASCM 360
           +  TD TFTV R + +K  +++E    E  A EV+ D  +AKVS +GVGMR+H+GVA+  
Sbjct: 300 EGVTDMTFTVPRKDLKKTLTLMEGIREETEALEVLHDVSVAKVSAIGVGMRNHSGVAAKA 359

Query: 361 FEALAKESINIQMISTSEIKVSVVLEEKYLELAVRALHTAFDLDA 405
           F AL KE+INI MISTSEIK++ ++EEKY ELAVR LH AF L +
Sbjct: 360 FAALRKENINILMISTSEIKITCLIEEKYTELAVRVLHDAFGLSS 404


Lambda     K      H
   0.316    0.133    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 448
Number of extensions: 19
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 408
Length adjustment: 31
Effective length of query: 380
Effective length of database: 377
Effective search space:   143260
Effective search space used:   143260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate 207382 DVU1913 (aspartate kinase, monofunctional class)
to HMM TIGR00656 (aspartate kinase, monofunctional class (EC 2.7.2.4))

Software error:

../bin/blast/fastacmd -i /tmp/list.28740.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.28740.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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