Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (characterized)
to candidate 209403 DVU0467 anthranilate phosphoribosyltransferase
Query= SwissProt::Q8PD71 (345 letters) >MicrobesOnline__882:209403 Length = 332 Score = 209 bits (532), Expect = 8e-59 Identities = 128/316 (40%), Positives = 174/316 (55%), Gaps = 3/316 (0%) Query: 20 HDEMVDL-MRQIMRGEVSDAMVSAILTGLRVKKETIGEIAGAATVMREFSRRVEVTDRRH 78 H EM +M G+++ A + L GLR+K ET E+ A + V D Sbjct: 18 HPEMAGAGFASLMDGDMTPAQAGSFLMGLRMKGETADEMTEAVRAALARAVTVRGVDAPS 77 Query: 79 MVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSADALEALGAVIELQ 138 +DIVGTGGDG +FN ST A G KV KHGNR+VSS GSADA+E LG +E+ Sbjct: 78 -IDIVGTGGDGRSSFNCSTATALTLAGMGHKVVKHGNRAVSSSCGSADAIEGLGLPLEVD 136 Query: 139 PEQVAASLAQTGIGFMYAPVHHPAMKVVAPVRREMGVRTIFNILGPLTNPAGSPNILMGV 198 V A L + G F++AP HPA + V P+RRE+GVRT+FN+LGPL NPA ++L+GV Sbjct: 137 AADVPAMLHERGFAFLFAPRFHPAFRHVMPIRRELGVRTLFNLLGPLLNPARPTHMLLGV 196 Query: 199 FHPDLVGIQARVLQELGAERALVVWGRDGMDELSLGAGTLVGELRDGQVHEYEVHPEDFG 258 L+ + A L+ GA RA VV+G G DEL+ V LRDG V E+EV P +G Sbjct: 197 ARESLMPLMAETLRRTGAARAAVVFGAGGYDELTPLGPARVLFLRDGIVSEHEVDPARYG 256 Query: 259 IAMSASRNLKVADAAESRAMLLQVLDNV-PGPALDIVALNAGAALYVAGVADSIADGIVR 317 IA +L V D E+ +L ++L P D++ N G AL++ + D + Sbjct: 257 IAPCTPEDLVVRDREEAVRVLRELLSGAGPQAMRDMLVFNVGMALHLLHDDRPLEDCMNE 316 Query: 318 ARQVLADGSARACLDA 333 AR+ + G+ R L A Sbjct: 317 ARRAVHAGAGRKVLHA 332 Lambda K H 0.320 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 341 Number of extensions: 10 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 345 Length of database: 332 Length adjustment: 28 Effective length of query: 317 Effective length of database: 304 Effective search space: 96368 Effective search space used: 96368 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate 209403 DVU0467 (anthranilate phosphoribosyltransferase)
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))
../bin/blast/fastacmd -i /tmp/list.16810.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16810.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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