GapMind for Amino acid biosynthesis

 

Alignments for a candidate for trpD_2 in Desulfovibrio vulgaris Hildenborough

Align Anthranilate phosphoribosyltransferase; EC 2.4.2.18 (characterized)
to candidate 209403 DVU0467 anthranilate phosphoribosyltransferase

Query= SwissProt::Q8PD71
         (345 letters)



>MicrobesOnline__882:209403
          Length = 332

 Score =  209 bits (532), Expect = 8e-59
 Identities = 128/316 (40%), Positives = 174/316 (55%), Gaps = 3/316 (0%)

Query: 20  HDEMVDL-MRQIMRGEVSDAMVSAILTGLRVKKETIGEIAGAATVMREFSRRVEVTDRRH 78
           H EM       +M G+++ A   + L GLR+K ET  E+  A       +  V   D   
Sbjct: 18  HPEMAGAGFASLMDGDMTPAQAGSFLMGLRMKGETADEMTEAVRAALARAVTVRGVDAPS 77

Query: 79  MVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSADALEALGAVIELQ 138
            +DIVGTGGDG  +FN ST      A  G KV KHGNR+VSS  GSADA+E LG  +E+ 
Sbjct: 78  -IDIVGTGGDGRSSFNCSTATALTLAGMGHKVVKHGNRAVSSSCGSADAIEGLGLPLEVD 136

Query: 139 PEQVAASLAQTGIGFMYAPVHHPAMKVVAPVRREMGVRTIFNILGPLTNPAGSPNILMGV 198
              V A L + G  F++AP  HPA + V P+RRE+GVRT+FN+LGPL NPA   ++L+GV
Sbjct: 137 AADVPAMLHERGFAFLFAPRFHPAFRHVMPIRRELGVRTLFNLLGPLLNPARPTHMLLGV 196

Query: 199 FHPDLVGIQARVLQELGAERALVVWGRDGMDELSLGAGTLVGELRDGQVHEYEVHPEDFG 258
               L+ + A  L+  GA RA VV+G  G DEL+      V  LRDG V E+EV P  +G
Sbjct: 197 ARESLMPLMAETLRRTGAARAAVVFGAGGYDELTPLGPARVLFLRDGIVSEHEVDPARYG 256

Query: 259 IAMSASRNLKVADAAESRAMLLQVLDNV-PGPALDIVALNAGAALYVAGVADSIADGIVR 317
           IA     +L V D  E+  +L ++L    P    D++  N G AL++      + D +  
Sbjct: 257 IAPCTPEDLVVRDREEAVRVLRELLSGAGPQAMRDMLVFNVGMALHLLHDDRPLEDCMNE 316

Query: 318 ARQVLADGSARACLDA 333
           AR+ +  G+ R  L A
Sbjct: 317 ARRAVHAGAGRKVLHA 332


Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 341
Number of extensions: 10
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 332
Length adjustment: 28
Effective length of query: 317
Effective length of database: 304
Effective search space:    96368
Effective search space used:    96368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate 209403 DVU0467 (anthranilate phosphoribosyltransferase)
to HMM TIGR01245 (trpD: anthranilate phosphoribosyltransferase (EC 2.4.2.18))

Software error:

../bin/blast/fastacmd -i /tmp/list.16810.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16810.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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