Align dihydroxy-acid dehydratase (EC 4.2.1.9) (characterized)
to candidate 208900 DVU3373 dihydroxy-acid dehydratase
Query= BRENDA::Q97UB2 (558 letters) >MicrobesOnline__882:208900 Length = 554 Score = 459 bits (1180), Expect = e-133 Identities = 242/555 (43%), Positives = 347/555 (62%), Gaps = 4/555 (0%) Query: 5 LNSPSRYHGIYNAPHRAFLRSVGLTDEEIGKPLVAIATAWSEAGPCNFHTLALARVAKEG 64 + S HG+ APHR+ L ++GLT EE+ +PLV + A +E P + H +A K G Sbjct: 1 MRSKKMTHGLEKAPHRSLLHALGLTREELARPLVGVVNAANEVVPGHIHLDDIAEAVKAG 60 Query: 65 TKEAGLSPLAFPTMVVNDNIGMGSEGMRYSLVSRDLIADMVEAQFNAHAFDGLVGIGGCD 124 + AG +PL FP + V D + M EGMR+SL SR+LIAD +E AH FD LV I CD Sbjct: 61 VRAAGGTPLEFPAIAVCDGLAMNHEGMRFSLPSRELIADSIEIMATAHPFDALVFIPNCD 120 Query: 125 KTTPGILMAMARLNVPSIYIYGGSAEPGYFMGKRLTIEDVHEAIGAYLAKRITENELYEI 184 K+ PG+LMAM RL+VPS+ + GG G + R + V E +G +TE EL E+ Sbjct: 121 KSVPGMLMAMLRLDVPSVMVSGGPMLAGATLAGRADLITVFEGVGRVQRGDMTEAELDEL 180 Query: 185 EKRAHPTLGTCSGLFTANTMGSMSEALGMALPGSASPTATSSRRVMYVKETGKALGSLIE 244 + A P G+C+G+FTAN+M ++E +G+ALPG+ + A ++ R+ K G + ++E Sbjct: 181 VEGACPGCGSCAGMFTANSMNCLAETIGLALPGNGTTPAVTAARIRLAKHAGMKVMEMLE 240 Query: 245 NGIKSREILTFEAFENAITTLMAMGGSTNAVLHLLAIAYEAGVKLTLDDFNRISKRTPYI 304 I+ R+I+T +A NA+ MA+G STN VLHL A+ EAG+ LTLD F+++S++TP + Sbjct: 241 RNIRPRDIVTEKAVANAVAVDMALGCSTNTVLHLPAVFAEAGLDLTLDIFDKVSRKTPNL 300 Query: 305 ASMKPGGDYVMADLDEVGGVPVVLKKLLDAGLLHGDVLTVTGKTMKQNLEQYKYPNVPHS 364 + P G + + DL GG+P V+ +L GL+ +TVTG+T+ +NL+ V + Sbjct: 301 CKLSPAGHHHIQDLHAAGGIPAVMAELDRIGLIDRSAMTVTGRTVGENLDALG-AKVRDA 359 Query: 365 HIVRDVKNPIKPRGGIVILKGSLAPEGAVIK--VAATNVVKFEGKAKVYNSEDDAFKGVQ 422 ++R V P P+GGI ILKGSLAP GAV+K A ++ E A+V++SE+ A + + Sbjct: 360 DVIRPVDAPYSPQGGIAILKGSLAPGGAVVKQSAVAPEMMVREAVARVFDSEEAACEAIM 419 Query: 423 SGEVSEGEVVIIRYEGPKGAPGMPEMLRVTAAIMGAGLN-NVALVTDGRFSGATRGPMVG 481 G + G+ ++IRYEGPKG PGM EML T+AI G GL +VAL+TDGRFSG TRG +G Sbjct: 420 GGRIKAGDAIVIRYEGPKGGPGMREMLTPTSAIAGMGLGADVALITDGRFSGGTRGAAIG 479 Query: 482 HVAPEAMVGGPIAIVEDGDTIVIDVESERLDLKLSEEEIKNRLKRWSPPSPRYKSGLLAK 541 HV+PEA GGPI +V++GD I ID+ + LDL + E+E+ R + P S LL + Sbjct: 480 HVSPEAAEGGPIGLVQEGDRIRIDIPARALDLLVDEDELARRRAAFVPVEKEITSPLLRR 539 Query: 542 YASLVSQASMGAVTR 556 YA +VS A+ GA R Sbjct: 540 YARMVSSAATGARQR 554 Lambda K H 0.316 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 843 Number of extensions: 43 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 558 Length of database: 554 Length adjustment: 36 Effective length of query: 522 Effective length of database: 518 Effective search space: 270396 Effective search space used: 270396 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)
Align candidate 208900 DVU3373 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.8532.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.8532.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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