Align Acetylornithine deacetylase; AO; Acetylornithinase; EC 3.5.1.16; N-acetylornithinase; NAO (uncharacterized)
to candidate WP_011384771.1 AMB_RS11990 acetylornithine deacetylase
Query= curated2:O68873 (380 letters) >NCBI__GCF_000009985.1:WP_011384771.1 Length = 404 Score = 196 bits (499), Expect = 7e-55 Identities = 137/386 (35%), Positives = 187/386 (48%), Gaps = 18/386 (4%) Query: 5 LPALRATLTELVAMDTTSFRPNVPLIDYAQARLEAAGFSAERQKFLDDAGVEKVNLVAVK 64 LPA T+ +L+A+DTTS++ N+ LID L G S R D K N+ A Sbjct: 24 LPASIETIAKLIAIDTTSYKTNLQLIDLVDKILSGLGASVRRTW---DESKNKANIFATI 80 Query: 65 GGSGSGRAALALVGHSDCVPYDAA-WT-DALRLTEKDGRLYARGACDTKGFIACALHAA- 121 G S + L GH+D VP D W+ D L + DG+LY RG D K FIA L A Sbjct: 81 GPSDV--PGIVLSGHTDVVPVDGQDWSRDPFHLVQADGKLYGRGTADMKSFIAICLAMAP 138 Query: 122 -LNAEQLKAPLMVVLTADEEVGLTGAKKLVE--AGLG-RARHAIVGEPTRLIPVRANKGY 177 A L+ P+ + DEEVG G ++L++ A L R IVGEPT + V +KG Sbjct: 139 QFAAAPLRMPVHFAFSYDEEVGCVGVRRLIDDLAHLPVRPALCIVGEPTDMKAVIGHKGK 198 Query: 178 CLAEVEVRGKEGHSAYPDSGASAIFRAGRFLQRLEHLALTVLRED-LDEGFQPPFTTVNV 236 V G E HSA G +AI A + RL L + + D G+QPP+TTV+ Sbjct: 199 KSVRCHVEGHECHSALNHQGVNAIEIAAEMVTRLRALQRRIREQGPFDLGYQPPYTTVHT 258 Query: 237 GVIQGGKAKNVIPGACRFVVEWRPIPGQPPERVSQLLETIRQELVRDEPAFEAQIRVVRT 296 G +QGG A N++P +C F E R +P PE + + Q+LV + A + Sbjct: 259 GTMQGGTALNIVPKSCSFEFEIRNLPDHDPETLMAEVRGWAQDLVPEMLAVSEASGITLD 318 Query: 297 DRGVNT-----RADAEVVRFLAEASGNAPETVSFGTEAPQMTELGAEAVVFGPGDIRVAH 351 + DA V A + N V+F TEA + G AVV GPG I AH Sbjct: 319 EHNSTPGLGMDEMDAAVRLVCALSGANQTSKVAFTTEAGLFQQAGIPAVVIGPGSITQAH 378 Query: 352 QTGEYVPVEDLVRCEAVLARAVAHFC 377 + E++ +E + +CE L R +AH C Sbjct: 379 RPDEFITLEQVAQCEDFLRRLLAHMC 404 Lambda K H 0.319 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 345 Number of extensions: 16 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 380 Length of database: 404 Length adjustment: 31 Effective length of query: 349 Effective length of database: 373 Effective search space: 130177 Effective search space used: 130177 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.9 bits)
Align candidate WP_011384771.1 AMB_RS11990 (acetylornithine deacetylase)
to HMM TIGR01892 (argE: acetylornithine deacetylase (ArgE) (EC 3.5.1.16))
../bin/blast/fastacmd -i /tmp/list.25248.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.25248.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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