Align argininosuccinate lyase (EC 4.3.2.1) (characterized)
to candidate WP_011386833.1 AMB_RS22715 argininosuccinate lyase
Query= BRENDA::Q8DVX5 (460 letters) >NCBI__GCF_000009985.1:WP_011386833.1 Length = 471 Score = 417 bits (1073), Expect = e-121 Identities = 218/454 (48%), Positives = 303/454 (66%), Gaps = 1/454 (0%) Query: 8 LWGGRFEAGLAQWVEEFGASISFDQKLAEFDLKGSIAHVTMLGEKGIISQEDAATIKAGL 67 +WGGRF G A ++ ASI FD++L D++GS AH ML ++ I+++ D A I GL Sbjct: 13 MWGGRFAGGPAAIMQRINASIDFDKRLYAQDIRGSKAHCRMLVKQQILTEADGALILDGL 72 Query: 68 EDLLEEYKAGQLKFDVSNEDIHMNMESLLTAKIGPVAGKLHTARSRNDQVATDMHLYLKA 127 + +L E +AG F + EDIHMN+ES L IG AG+LHTARSRNDQVATD L+++ Sbjct: 73 DKVLAEIEAGNFPFSHALEDIHMNVESRLAELIGEAAGRLHTARSRNDQVATDFRLWVRD 132 Query: 128 KLDEVIEKLANLRTVLVDLADKHVHTIMPGYTHLQHAQPISFGHHLMAYYNMFTRDSERF 187 +D + L L T L+D A++H T+MPG+THLQ AQP++FGHH+MAY M +RD R Sbjct: 133 AVDGMESALKELVTALLDRAEEHAATVMPGFTHLQTAQPVTFGHHMMAYVEMISRDRSRL 192 Query: 188 IFNVKHTDLSPLGAAALAGTTFPIDREMTAQLMGFAEPYSNSLDAVSDRDFILEFLSNAS 247 + + PLG+AALAGT+FPIDRE TA+ +GFA P NSLD VSDRDF LEF+S ++ Sbjct: 193 ADARRRLNECPLGSAALAGTSFPIDREATARDLGFAGPMRNSLDGVSDRDFALEFMSASA 252 Query: 248 ILMMHMSRMCEEVISWCSHEYQFVTLSDTFSTGSSIMPQKKNPDMAELIRGKSGRVYANL 307 I +H+SR+ EE++ W S +++FVTLSD F+TGSSIMPQK+NPD AELIR K+GRV +L Sbjct: 253 ICAVHLSRLAEELVIWTSSQFRFVTLSDAFTTGSSIMPQKRNPDAAELIRAKTGRVIGDL 312 Query: 308 FGLLTVMKALPLAYNKDLQEDKEGMFDTAETITVALDILAGMLSSMIVNDKHMAESTQKD 367 LL VMK LPLAY+KD+Q+DKE +F+ A+T+ +A+ + GM+ M VN + + Sbjct: 313 NALLIVMKGLPLAYSKDMQDDKEPVFEVADTMELAIAAMTGMVRDMTVNVDILRAAAGAG 372 Query: 368 FSNATELADY-LASKGMPFRQAHEIVGKLILECSKNGHYLQDVPLERYQTISDLIEEDVY 426 F+ AT++AD+ + + MPFR+AH + G L+ L+D+ L Q I I E+ Sbjct: 373 FTTATDIADWCVRALKMPFRRAHHVAGSLVKLAEGKNCGLEDLTLAEMQAIEPGITEEAR 432 Query: 427 ETLKSHTAVERRHSLGGTGFEQVKWQIAEAKKAL 460 L ++V R SLGGT +V+ +A A++ L Sbjct: 433 SVLSVESSVNSRTSLGGTAPVRVREAVAGARRRL 466 Lambda K H 0.318 0.132 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 533 Number of extensions: 12 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 460 Length of database: 471 Length adjustment: 33 Effective length of query: 427 Effective length of database: 438 Effective search space: 187026 Effective search space used: 187026 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate WP_011386833.1 AMB_RS22715 (argininosuccinate lyase)
to HMM TIGR00838 (argH: argininosuccinate lyase (EC 4.3.2.1))
../bin/blast/fastacmd -i /tmp/list.22222.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.22222.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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