Align Carbamoyl-phosphate synthase small chain, chloroplastic; Carbamoyl-phosphate synthetase glutamine chain; Protein VENOSA 6; EC 6.3.5.5 (characterized)
to candidate WP_050750618.1 AMB_RS03600 carbamoyl-phosphate synthase small subunit
Query= SwissProt::Q9LVW7 (430 letters) >NCBI__GCF_000009985.1:WP_050750618.1 Length = 401 Score = 318 bits (814), Expect = 2e-91 Identities = 172/374 (45%), Positives = 234/374 (62%), Gaps = 12/374 (3%) Query: 60 LVLEDGSIWPAKSFGAPGTRIAELVFNTSLTGYQEILTDPSYAGQFVLMTNPQIGNTGVN 119 LVL DGS+ K GA G+ + E+VF T +TGYQE LTDPS+AGQ + T P +GN G N Sbjct: 30 LVLADGSVLWGKGIGATGSNVGEVVFTTGMTGYQETLTDPSFAGQVITFTFPHVGNVGTN 89 Query: 120 PDDEESGQCFLTGLVIRNLSISTSNWRCTKTLADYLTERDIMGVYDLDTRAITRRLREDG 179 +D E+ GL++R +NWR K L +L +I+G+ +DTRA+TRR+R G Sbjct: 90 VEDLETTTPAARGLILRADITDPANWRSAKHLDSWLKANNIVGLCGVDTRALTRRIRAKG 149 Query: 180 SLIGVLSTEQSKTDD--ELLQMSRSWD-IVGIDLISDVSCKSPYEWVDKTNAEWDFNTN- 235 + GV+ D L + W + G+DL DV+C Y W D+T EW Sbjct: 150 APNGVIVNAPDGAFDLPALWGKAAGWPGLEGMDLARDVTCAQTYSW-DET--EWSLRGGY 206 Query: 236 SRDGKS-YKVIAYDFGIKQNILRRLSSYGCQITVVPSTFPAAEALKMNPDGILFSNGPGD 294 R K + V+A DFG K+NILR L+ GC++TV+P+ A + L + PDG+ SNGPGD Sbjct: 207 GRQAKPRFHVVAVDFGAKRNILRCLAETGCKVTVLPAEATAEQVLALEPDGVFLSNGPGD 266 Query: 295 PSAV-PYAVETVKELL--GKVPVYGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNNRT 351 P+A YAV ++ ++ GK P++GIC+GHQ+LG ALG KTFKM GH G NHPV++ T Sbjct: 267 PAATGTYAVPMIQGVIKSGK-PLFGICLGHQMLGLALGAKTFKMDTGHRGANHPVKDLET 325 Query: 352 GQVEISAQNHNYAVDPASLPGGVEVTHVNLNDGSCAGLSFPEMNVMSLQYHPEASPGPHD 411 G+VEI++QNH + VD SLP GV+VTH +L DGS G++ V S+QYHPEASPGP D Sbjct: 326 GKVEITSQNHGFVVDEKSLPAGVKVTHRSLFDGSVEGIAVDGKPVFSVQYHPEASPGPQD 385 Query: 412 SDNAFREFIELMKR 425 + F F+ LM++ Sbjct: 386 AHYLFERFVGLMEK 399 Lambda K H 0.316 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 514 Number of extensions: 20 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 430 Length of database: 401 Length adjustment: 31 Effective length of query: 399 Effective length of database: 370 Effective search space: 147630 Effective search space used: 147630 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate WP_050750618.1 AMB_RS03600 (carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.15492.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15492.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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