Align Branched-chain amino acid aminotransferase (EC 2.6.1.42) (characterized)
to candidate WP_043743277.1 AMB_RS02850 branched-chain amino acid aminotransferase
Query= reanno::BFirm:BPHYT_RS16285 (307 letters) >NCBI__GCF_000009985.1:WP_043743277.1 Length = 290 Score = 239 bits (609), Expect = 7e-68 Identities = 124/289 (42%), Positives = 177/289 (61%), Gaps = 8/289 (2%) Query: 5 DRDGKIWMDGKLIDWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLQEHTKRLL 64 DRDG +W DGKL+ WRDAKIHVLTH LHYG VFEG R Y G +F+L+EH++RL+ Sbjct: 8 DRDGFLWFDGKLVPWRDAKIHVLTHGLHYGSCVFEGERVY-----GGKVFKLREHSQRLI 62 Query: 65 NSAKIFQMDVPFDHETLAAAQCEVVRENKLESCYLRPIIWVGSEKLGVSAKGNTIHVAIA 124 +S +I +VP+ E + A V+ N + Y+RP+ W GSE +GV+A+ I A+A Sbjct: 63 DSGRILGFEVPWTVEEIDEATMATVKANNIVDGYVRPVAWRGSEMMGVAAQTTKIRFAVA 122 Query: 125 AWPWGAYLGEDGIAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQEAIADGYDEA 184 W W +Y + KGIR+ S++ R H + +KA+G Y+ ++ +A DGY+++ Sbjct: 123 TWSWPSYWSPEARMKGIRLNISTWKRPHPETAPTASKAAGLYMICTMSKHKAEGDGYEDS 182 Query: 185 LLLDVDGYVSEGSGENFFLVNNGKLYTPDLSSCLDGITRDTVITLARDAGIQVIEKRITR 244 L+LD G V+E +G N F V +L+TP L+GITR TVI LA+ GI V+E+ I Sbjct: 183 LMLDWRGQVAEATGANIFFVFGNELHTPTPDCFLNGITRQTVIALAKKRGITVVERAIFP 242 Query: 245 DEVYTCDEAFFTGTAAEVTPIRELDNRTIGSGARGPITEKLQSGFFDIV 293 +E+ E F TGTAAEVTP+RE+ T G IT +L + + +V Sbjct: 243 EEMTKASECFLTGTAAEVTPVREIGPYTF---TPGDITRQLITDYDALV 288 Lambda K H 0.319 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 286 Number of extensions: 9 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 307 Length of database: 290 Length adjustment: 27 Effective length of query: 280 Effective length of database: 263 Effective search space: 73640 Effective search space used: 73640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 48 (23.1 bits)
Align candidate WP_043743277.1 AMB_RS02850 (branched-chain amino acid aminotransferase)
to HMM TIGR01122 (ilvE: branched-chain amino acid aminotransferase (EC 2.6.1.42))
../bin/blast/fastacmd -i /tmp/list.31204.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31204.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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