Align 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (characterized)
to candidate WP_011386420.1 AMB_RS20570 3-isopropylmalate dehydrogenase
Query= BRENDA::P24404 (370 letters) >NCBI__GCF_000009985.1:WP_011386420.1 Length = 369 Score = 429 bits (1103), Expect = e-125 Identities = 214/370 (57%), Positives = 277/370 (74%), Gaps = 1/370 (0%) Query: 1 MTVRSLFLLPGDGIGPEAMTEVRKLIEYMNSAHNAGFTVSEGLVGGSAYDAHGVAISDAD 60 M + L +LPGDGIG E M +VR++I++M F ++EGL+GG+AYD HG Sbjct: 1 MAAKKLLILPGDGIGVEVMAQVRRIIDWMGRKRKIEFEITEGLLGGAAYDVHGTPYPAET 60 Query: 61 MEKALAADAILFGAVGGPKWDGVPYEHRPEAGLLRLRKDLELFANLRPAICYPALAAASS 120 +E ALAADA+L GAVGGPKWD +P++ +PE GLL +RKD+ LFANLRPA ALA AS+ Sbjct: 61 LEAALAADAVLLGAVGGPKWDDLPFDKKPERGLLGIRKDMGLFANLRPATVLEALADAST 120 Query: 121 LKPELVEGLDILIVRELTGGVYFGEPKQIIDLGNGQKRGIDTQIYDTFEIERIASVAFEL 180 LK E+V GLDI+I+RELTGG+YFG+P+ I L +G ++G +T +Y T EI+RI VAF+L Sbjct: 121 LKAEVVSGLDIMILRELTGGLYFGQPRGIDTLPDGTRKGYNTLVYTTPEIQRIGRVAFDL 180 Query: 181 ARSRDNRVCSMEKRNVMKSGVLWNQVVTETHAAKYKDVQLEHMLADAGGMQLVRKPKQFD 240 AR R+ ++CS++K NV++ VLW + + + ++ DV+L HM D MQLVR PKQFD Sbjct: 181 ARKRNKKLCSVDKANVLECTVLWREEMIKLQKEEFPDVELTHMYVDNAAMQLVRNPKQFD 240 Query: 241 VIVTDNLFGDMLSDVAAMLTGSLGMLPSASLGAPDAKTGKRKAMYEPVHGSAPDIAGKSI 300 V+VT+N+FGD+LSD AAMLTGSLGMLPSASLG DA+ GKRKA+YEPVHGSAPDIAGK + Sbjct: 241 VMVTENMFGDILSDCAAMLTGSLGMLPSASLGEADAQ-GKRKALYEPVHGSAPDIAGKDM 299 Query: 301 ANPIAMIASFAMCLRYSFNMVDEATKLEAAIANVLDKGIRTADIMADGCRQVGTSDMGDA 360 ANP+A I SFAMCLRYSF+M EA +E A+ NVL G+RTADIM G +V T+ MG+A Sbjct: 300 ANPLATIMSFAMCLRYSFDMAAEADLIETAVKNVLKGGLRTADIMQPGKAKVSTTVMGEA 359 Query: 361 VLAEFKALSA 370 V+ E L+A Sbjct: 360 VVRELDKLNA 369 Lambda K H 0.319 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 434 Number of extensions: 8 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 370 Length of database: 369 Length adjustment: 30 Effective length of query: 340 Effective length of database: 339 Effective search space: 115260 Effective search space used: 115260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate WP_011386420.1 AMB_RS20570 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))
../bin/blast/fastacmd -i /tmp/list.10420.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.10420.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.