Align dihydrodipicolinate reductase; EC 1.3.1.26 (characterized)
to candidate WP_043745687.1 AMB_RS22745 4-hydroxy-tetrahydrodipicolinate reductase
Query= CharProtDB::CH_002128 (273 letters) >NCBI__GCF_000009985.1:WP_043745687.1 Length = 265 Score = 257 bits (656), Expect = 2e-73 Identities = 131/265 (49%), Positives = 170/265 (64%) Query: 6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSS 65 +R+ I G GRMGR L++A L+ EG L ER GS ++G D G L G G V + Sbjct: 1 MRIGIVGCNGRMGRMLMEAVLSAEGCTLSGGTERAGSEVIGLDPGTLLGRPPVGALVTAD 60 Query: 66 LDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVF 125 + D IDFT P TL H A + GK +V+GTTG + + + +AA +V+ Sbjct: 61 ARTLFQASDAVIDFTAPAATLAHAAIAAELGKVLVVGTTGLSKDDEARLAEAARSTPVVY 120 Query: 126 AANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKD 185 A NFSVGVN+++ L E+AA ++GD DIEI+E HHRHKVDAPSGTAL +G + A Sbjct: 121 APNFSVGVNLLMALTERAAAILGDDYDIEIVEMHHRHKVDAPSGTALGLGRSAALGRQVA 180 Query: 186 LKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFAN 245 L +R+GHTG R G IGFAT+R GD+VG+HT MFA GER+E+THKASSR FA Sbjct: 181 LDSRWCKARDGHTGARPKGEIGFATLRGGDVVGDHTVMFAAEGERVELTHKASSRTVFAK 240 Query: 246 GAVRSALWLSGKESGLFDMRDVLDL 270 GAVR+A W +G++ GL+ MRDVL L Sbjct: 241 GAVRAARWATGQKPGLYSMRDVLGL 265 Lambda K H 0.319 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 233 Number of extensions: 9 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 273 Length of database: 265 Length adjustment: 25 Effective length of query: 248 Effective length of database: 240 Effective search space: 59520 Effective search space used: 59520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.7 bits)
Align candidate WP_043745687.1 AMB_RS22745 (4-hydroxy-tetrahydrodipicolinate reductase)
to HMM TIGR00036 (dapB: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))
../bin/blast/fastacmd -i /tmp/list.1687.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1687.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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