Align Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18 (characterized)
to candidate WP_011386228.1 AMB_RS19600 succinyl-diaminopimelate desuccinylase
Query= SwissProt::Q9JYL2 (381 letters) >NCBI__GCF_000009985.1:WP_011386228.1 Length = 379 Score = 298 bits (764), Expect = 1e-85 Identities = 170/381 (44%), Positives = 232/381 (60%), Gaps = 8/381 (2%) Query: 1 MTETQSLELAKELISRPSVTPDDRDCQKLLAERLHKIGFAAEELHFG----DTKNIWLRR 56 M+ + LA+ LI PSVTP+D +LA L ++GFA + + +N++ R Sbjct: 1 MSFRDPVPLAQALIRCPSVTPEDAGALDVLAGALEELGFACHHIRSATGGPEIRNLYARL 60 Query: 57 GTKAPVVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADMKTSIACFVTACERF 116 GT+AP +CFAGHTDVVP G + W PF GRL+GRG+ADMK +IACFV A R Sbjct: 61 GTEAPNLCFAGHTDVVPPG--KGWTVEPFAAGIDQGRLFGRGSADMKGAIACFVAAVARL 118 Query: 117 VAKHPNHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAVDKLGDMIK 176 + + +GS++LLIT DEEG A+DGT KV+D L AR E ID CIVGEPT KLGDM+K Sbjct: 119 L-EDGAPKGSLSLLITGDEEGPAVDGTVKVLDWLAARGERIDCCIVGEPTNPRKLGDMMK 177 Query: 177 NGRRGSLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQIS 236 GRRGSL+ LTV G QGH AYPHLA NP+ L LT+ DEG +F ++ ++ Sbjct: 178 IGRRGSLNCRLTVFGTQGHSAYPHLADNPIPRLLDILRRLTEAPLDEGTPHFQASTLALT 237 Query: 237 NINGGTGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILDKHGVQYDLQWSCSGQPFL 296 ++ G ATNVIP E FN RF+ + A L++ + + + G + +++ SG+ FL Sbjct: 238 TVDVGNPATNVIPAEARAGFNIRFNDLHSGASLERWIRDTVAQAGGEVEIKVEVSGESFL 297 Query: 297 TQAGKLTDVARAAIAETCGIEAELSTTGGTSDGRFIKAIAQELIELGPSNATIHQINENV 356 T G L+D A E G+ ELST+GGTSD RFIK ++E G T+H+ +E+V Sbjct: 298 TPPGALSDALAEAAFEVTGLRPELSTSGGTSDARFIKNHC-PVVEFGLVGQTMHKSDEHV 356 Query: 357 RLNDIPKLSAVYEGILARLLA 377 + D+ L+ +Y +L RL A Sbjct: 357 SVADMEALTEIYRRVLVRLAA 377 Lambda K H 0.317 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 426 Number of extensions: 25 Number of successful extensions: 5 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 381 Length of database: 379 Length adjustment: 30 Effective length of query: 351 Effective length of database: 349 Effective search space: 122499 Effective search space used: 122499 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.9 bits)
Align candidate WP_011386228.1 AMB_RS19600 (succinyl-diaminopimelate desuccinylase)
to HMM TIGR01246 (dapE: succinyl-diaminopimelate desuccinylase (EC 3.5.1.18))
../bin/blast/fastacmd -i /tmp/list.30003.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.30003.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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