GapMind for Amino acid biosynthesis

 

Alignments for a candidate for metX in Magnetospirillum magneticum AMB-1

Align Homoserine O-acetyltransferase; HAT; Homoserine transacetylase; HTA; EC 2.3.1.31 (characterized)
to candidate WP_011386326.1 AMB_RS20100 homoserine O-acetyltransferase

Query= SwissProt::Q9AAS1
         (382 letters)



>NCBI__GCF_000009985.1:WP_011386326.1
          Length = 393

 Score =  521 bits (1341), Expect = e-152
 Identities = 253/363 (69%), Positives = 293/363 (80%), Gaps = 2/363 (0%)

Query: 20  NEPLRLDSGGVIEGLEIAYQTYGQLNADKSNAVLICHALTGDQHVASPHPTTGKPGWWQR 79
           + P+RLD G  +  +++AYQTYG+LNADKSNA+LICHALTGD +VA PHP T KPGWW  
Sbjct: 24  DRPIRLDCGVELGPIQVAYQTYGRLNADKSNAILICHALTGDHYVADPHPITAKPGWWHE 83

Query: 80  LVGPGKPLDPARHFIICSNVIGGCMGSTGPASINPATGKTYGLSFPVITIADMVRAQAML 139
           LVGPG+  D  R+F+ICSNV+GGCMG+TGP   NPATG+ +GL FPVITI DMV+ QA L
Sbjct: 84  LVGPGRVFDTDRYFLICSNVLGGCMGTTGPVDENPATGQAWGLDFPVITIGDMVKVQARL 143

Query: 140 VSALGVETLFAVVGGSMGGMQVQQWAVDYPERMFSAVVLASASRHSAQNIAFHEVGRQAI 199
           V  LG++ LF VVGGSMGGMQV +WA  YPER+FSA+ +ASA+RHSAQNIAFHEVGRQAI
Sbjct: 144 VDHLGIDQLFCVVGGSMGGMQVLKWAQVYPERVFSAIPIASAARHSAQNIAFHEVGRQAI 203

Query: 200 MADPDWRGGAYAEHGVRPEKGLAVARMAAHITYLSEPALQRKFGRELQ-RDGLSWGFDAD 258
           MADPDW  G Y + G RP +GLAVARMAAHITYLSEPAL +KFGR LQ RD +++GFDAD
Sbjct: 204 MADPDWCEGNYLQEGKRPHRGLAVARMAAHITYLSEPALHQKFGRNLQNRDTVTYGFDAD 263

Query: 259 FQVESYLRHQGSSFVDRFDANSYLYITRAMDYFDIAASHGGVLAKAFTRARNVRFCVLSF 318
           FQVESYLRHQG++FVDRFDANSYLYITRAMDYFD+AA  GGVLA AF R    RFCV+SF
Sbjct: 264 FQVESYLRHQGNTFVDRFDANSYLYITRAMDYFDLAAESGGVLANAF-RGTRTRFCVVSF 322

Query: 319 SSDWLYPTAENRHLVRALTAAGARAAFAEIESDKGHDAFLLDEPVMDAALEGFLASAERD 378
           +SDWL+PT E+R +V AL A  A  +F EI+SDKGHDAFLLDEP   A L GFL  A   
Sbjct: 323 TSDWLFPTPESRAVVHALNAVAANVSFVEIKSDKGHDAFLLDEPEFHATLTGFLEGAATH 382

Query: 379 RGL 381
           RGL
Sbjct: 383 RGL 385


Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 564
Number of extensions: 24
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 393
Length adjustment: 30
Effective length of query: 352
Effective length of database: 363
Effective search space:   127776
Effective search space used:   127776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)

Align candidate WP_011386326.1 AMB_RS20100 (homoserine O-acetyltransferase)
to HMM TIGR01392 (metX: homoserine O-acetyltransferase (EC 2.3.1.31))

Software error:

../bin/blast/fastacmd -i /tmp/list.5718.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.5718.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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