GapMind for Amino acid biosynthesis

 

Alignments for a candidate for proB in Magnetospirillum magneticum AMB-1

Align glutamate 5-kinase (EC 2.7.2.11) (characterized)
to candidate WP_011386430.1 AMB_RS20630 glutamate 5-kinase

Query= BRENDA::P0A7B5
         (367 letters)



>NCBI__GCF_000009985.1:WP_011386430.1
          Length = 370

 Score =  260 bits (664), Expect = 5e-74
 Identities = 153/367 (41%), Positives = 213/367 (58%), Gaps = 5/367 (1%)

Query: 1   MSDSQTLVVKLGTSVLTGGSR-RLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREH 59
           ++ ++ L+VK+G+S+L   S  ++ R  +  L    A   A G  +++V+SGA+A GR  
Sbjct: 4   LAAAKRLIVKIGSSLLVDDSTGQVRRGWLETLAADIAACKARGQEVIVVSSGAVAVGRRK 63

Query: 60  LGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARD 119
           LG    P  +  KQ  AA GQ RL   W+   + + I V Q+LLT  D E+R R+LNAR 
Sbjct: 64  LGLVP-PLKLEEKQAAAATGQIRLAHAWQDALAHHQITVAQVLLTLDDSENRRRYLNARS 122

Query: 120 TLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADP 179
           TL  LL    VPVINEND VATAEI+VGDND L+A  A +  AD L+L +D  GLYTADP
Sbjct: 123 TLETLLKLGAVPVINENDTVATAEIRVGDNDRLAARVAQMVSADALVLFSDIDGLYTADP 182

Query: 180 RSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKP 239
           R +P A  I +V+ +   + A+AGD  S  G+GGM TKL AA +   AG    I  G   
Sbjct: 183 RKDPDARFIPEVHELTPEIEAMAGDPGSAYGSGGMVTKLVAARICLSAGCRMAITRGEPM 242

Query: 240 GVIGDVMEGISVGTLFHAQATPLENRKRWIFGA-PPAGEITVDEGATAAILERGSSLLPK 298
             +  + +G    T F   + P   RK+WIFG+  P G + +D GA  A L +G SLLP 
Sbjct: 243 HPLKTIEDG-GRCTWFLPNSEPRTARKQWIFGSMKPTGTLVLDAGAARA-LAQGRSLLPA 300

Query: 299 GIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVA 358
           GI  V+G F RG+ + + +  G+ +  G+  Y++D  R I G  S EI+AILG+      
Sbjct: 301 GITEVSGAFERGDCVLVKDGSGKVLGRGLVAYSADDSRAIMGRKSGEIEAILGFRGRDEL 360

Query: 359 VHRDDMI 365
           +HRDD++
Sbjct: 361 IHRDDLV 367


Lambda     K      H
   0.318    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 385
Number of extensions: 21
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 370
Length adjustment: 30
Effective length of query: 337
Effective length of database: 340
Effective search space:   114580
Effective search space used:   114580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_011386430.1 AMB_RS20630 (glutamate 5-kinase)
to HMM TIGR01027 (proB: glutamate 5-kinase (EC 2.7.2.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.18709.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18709.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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