Align phosphoserine phosphatase (EC 3.1.3.3) (characterized)
to candidate WP_011385839.1 AMB_RS17605 phosphoserine phosphatase SerB
Query= BRENDA::Q58989 (211 letters) >NCBI__GCF_000009985.1:WP_011385839.1 Length = 298 Score = 157 bits (396), Expect = 3e-43 Identities = 83/205 (40%), Positives = 128/205 (62%) Query: 3 KKKKLILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLKD 62 ++K L++ D DST+V ET+DE+A AG+++ + +IT AM G++ FE +LR+RV LLKD Sbjct: 82 RRKMLLVADMDSTMVIGETLDELADFAGLKDHIARITARAMNGEIGFEAALRERVGLLKD 141 Query: 63 LPIEKVEKAIKRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANR 122 LP E ++K RI T GA + ++ + G +VSGGF +K+++ G AN Sbjct: 142 LPEECLQKTWDRIEFTPGAHKLVRTMVKHGAHAVLVSGGFKFFTSKVRDACGFHRDIANE 201 Query: 123 LIVKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLKI 182 LIV++G+LTG V ++ AK L ++ GI E V+VGDGAND+ M + AGL + Sbjct: 202 LIVENGRLTGQVGDTIIGREAKLATLNAVSAELGITPELAVSVGDGANDLDMLRAAGLGV 261 Query: 183 AFCAKPILKEKADICIEKRDLREIL 207 AF AKP++ +A + ++ DL +L Sbjct: 262 AFHAKPVVAAEARVRVDHGDLVTLL 286 Lambda K H 0.314 0.136 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 167 Number of extensions: 8 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 211 Length of database: 298 Length adjustment: 24 Effective length of query: 187 Effective length of database: 274 Effective search space: 51238 Effective search space used: 51238 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 46 (22.3 bits)
Align candidate WP_011385839.1 AMB_RS17605 (phosphoserine phosphatase SerB)
to HMM TIGR00338 (serB: phosphoserine phosphatase SerB (EC 3.1.3.3))
../bin/blast/fastacmd -i /tmp/list.15783.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.15783.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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