GapMind for Amino acid biosynthesis

 

Alignments for a candidate for thrB in Magnetospirillum magneticum AMB-1

Align Homoserine kinase; HK; HSK; EC 2.7.1.39 (uncharacterized)
to candidate WP_011383206.1 AMB_RS03910 homoserine kinase

Query= curated2:Q2W9A8
         (326 letters)



>NCBI__GCF_000009985.1:WP_011383206.1
          Length = 326

 Score =  672 bits (1733), Expect = 0.0
 Identities = 326/326 (100%), Positives = 326/326 (100%)

Query: 1   MAVYTEVSDDELEDFAAEYDIGQVVSCKGIAEGVENTNYLLQTDQGNYILTLYEKRVNPE 60
           MAVYTEVSDDELEDFAAEYDIGQVVSCKGIAEGVENTNYLLQTDQGNYILTLYEKRVNPE
Sbjct: 1   MAVYTEVSDDELEDFAAEYDIGQVVSCKGIAEGVENTNYLLQTDQGNYILTLYEKRVNPE 60

Query: 61  ELPFFLGLMEHLAAHGLACPTPIHGRDGKALRTLCGRPAAIVSFLKGMWSRRITLGHCAE 120
           ELPFFLGLMEHLAAHGLACPTPIHGRDGKALRTLCGRPAAIVSFLKGMWSRRITLGHCAE
Sbjct: 61  ELPFFLGLMEHLAAHGLACPTPIHGRDGKALRTLCGRPAAIVSFLKGMWSRRITLGHCAE 120

Query: 121 LGPAMATMHLAGADFPLTRANNLSVAGWRPLFESIRPRAAEIKSDLAQSIEDELDYLEAH 180
           LGPAMATMHLAGADFPLTRANNLSVAGWRPLFESIRPRAAEIKSDLAQSIEDELDYLEAH
Sbjct: 121 LGPAMATMHLAGADFPLTRANNLSVAGWRPLFESIRPRAAEIKSDLAQSIEDELDYLEAH 180

Query: 181 WPRTLPVGLIHADLFPDNVFFLADKAAGVDRMSGFIDFYFACTDVLAYDIAICLNAWCFE 240
           WPRTLPVGLIHADLFPDNVFFLADKAAGVDRMSGFIDFYFACTDVLAYDIAICLNAWCFE
Sbjct: 181 WPRTLPVGLIHADLFPDNVFFLADKAAGVDRMSGFIDFYFACTDVLAYDIAICLNAWCFE 240

Query: 241 EDGAFNATKARLMLNGYRRVRPLSADELDALPLLARGAAMRFLLTRSYDWLHTPPGAMVK 300
           EDGAFNATKARLMLNGYRRVRPLSADELDALPLLARGAAMRFLLTRSYDWLHTPPGAMVK
Sbjct: 241 EDGAFNATKARLMLNGYRRVRPLSADELDALPLLARGAAMRFLLTRSYDWLHTPPGAMVK 300

Query: 301 RKDPMEYYRKLRFHQGVTGPGQYGIE 326
           RKDPMEYYRKLRFHQGVTGPGQYGIE
Sbjct: 301 RKDPMEYYRKLRFHQGVTGPGQYGIE 326


Lambda     K      H
   0.323    0.140    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 532
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 326
Length adjustment: 28
Effective length of query: 298
Effective length of database: 298
Effective search space:    88804
Effective search space used:    88804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)

Align candidate WP_011383206.1 AMB_RS03910 (homoserine kinase)
to HMM TIGR00938 (thrB: homoserine kinase (EC 2.7.1.39))

Software error:

../bin/blast/fastacmd -i /tmp/list.11512.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.11512.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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