Align Ribulokinase (EC 2.7.1.16) (characterized)
to candidate 7024890 Shewana3_2064 ribulokinase (RefSeq)
Query= reanno::Cola:Echvi_0515 (562 letters) >FitnessBrowser__ANA3:7024890 Length = 557 Score = 607 bits (1564), Expect = e-178 Identities = 298/550 (54%), Positives = 387/550 (70%), Gaps = 3/550 (0%) Query: 5 FVIGLDYGSDSVRAVIVNTGNGEVKGSHVFWYPRWKAGKYCDPVNNQFRQHPLDHLEGLE 64 + +GLDYGSDSVRA++V+T G ++V +YPRWK G +C+P NQFRQHPLD++E L Sbjct: 8 YALGLDYGSDSVRALLVDTQTGAEVATNVVYYPRWKKGLFCEPAKNQFRQHPLDYIESLI 67 Query: 65 ETIREV-IKESGVPADQIKGICVDTTGSSPMAVDQQGKPLALSPEFAENPNAMMVLWKDH 123 E ++ + K A ++ G+ VDTTGS+P+AVD+ G LAL PEF NPNAM +LWKDH Sbjct: 68 EVVQGLWAKAPSGAAQRVCGLSVDTTGSTPIAVDESGVALALKPEFENNPNAMFLLWKDH 127 Query: 124 TAIKEADEINELARTWGGEDYTKYEGGIYSSEWFWAKILHVIREDDAVAQAAYSWMEHCD 183 +AI EA +I A E+Y KYEGGIYSSEWFWAK L V+R D V QAAYSW+EHCD Sbjct: 128 SAIIEAKQITAAAND-SSENYLKYEGGIYSSEWFWAKALFVLRHDAEVRQAAYSWVEHCD 186 Query: 184 VITAELIGADNPLDVKRSRCAAGHKALWHESWDGLPPKEFLSKLDPRLADLRDRLYTETF 243 ITA + G +P K RCAAGHK +WHESW+G PP +F +DP L LRD+L ET Sbjct: 187 WITALMTGTSHPKVFKAGRCAAGHKVMWHESWNGYPPNDFFVGIDPLLDGLRDKLPLETC 246 Query: 244 TSDLPAGNLSAEWAKKLGLSTDTVIAVGTFDAHAGAVGGEVTENTLVKVMGTSTCDIMVA 303 TSD G L+ EWA+ LGLST+ +++ G+FD HAGAVG V L KVMGTSTCDI VA Sbjct: 247 TSDKVCGQLTPEWAQHLGLSTEVIVSFGSFDCHAGAVGANVKPGVLTKVMGTSTCDITVA 306 Query: 304 THEAIGDNLVKGICGQVDGSVIPGTVGLEAGQSGFGDVLAWFKHLVVKPTAALIRASNVL 363 ++E IG+ +KGICGQVDGSV+PG +GLEAGQS FGD+ AWF+ L P L S + Sbjct: 307 SYEDIGERCIKGICGQVDGSVLPGMIGLEAGQSAFGDLYAWFRDLTAWPMQQL-DTSVLF 365 Query: 364 DEEKKEALIHEIDSQLLIKLSEEAIQIPLSETAPVALDWVNGRRTPDANQALKGAVMGLN 423 DE K LI +++S+ L L A +IP+ ET VALDW+NGRRTPDA+Q++ A+ GL Sbjct: 366 DENIKAKLIQQLESETLTMLGNAAAKIPVGETGIVALDWINGRRTPDADQSVAMAITGLT 425 Query: 424 MGTDAARVFKALVESICFGSKKIVDRFREEGVAIDTVIGMGGVAKKSKLVMQTMADVLNM 483 MG+ A +VFKALVE+ +G++ I++RF++EGV ID V+ +GG++KKS +MQT ADV N Sbjct: 426 MGSQAPQVFKALVEASAYGARAIIERFKQEGVCIDHVVTIGGISKKSDFIMQTCADVWNC 485 Query: 484 PIKIATSDQAPALGAAMYASVAAGIHPTTEAAIAAMTNGFDKVYEPIPENVEVYKALYAK 543 I + S+Q+ ALGAA+YA+ AAG++P +A AAM + K Y+P PEN E Y+ALY Sbjct: 486 NIDVLESEQSCALGAAIYAATAAGVYPDVLSAQAAMASNVAKTYQPNPENAEKYQALYQG 545 Query: 544 YAEFGAFVEG 553 Y G +V+G Sbjct: 546 YLALGHYVDG 555 Lambda K H 0.316 0.133 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 881 Number of extensions: 41 Number of successful extensions: 4 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 562 Length of database: 557 Length adjustment: 36 Effective length of query: 526 Effective length of database: 521 Effective search space: 274046 Effective search space used: 274046 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)
Align candidate 7024890 Shewana3_2064 (ribulokinase (RefSeq))
to HMM TIGR01234 (araB: ribulokinase (EC 2.7.1.16))
../bin/blast/fastacmd -i /tmp/list.23540.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.23540.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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