Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate 7023985 Shewana3_1193 pyrroline-5-carboxylate reductase (RefSeq)
Query= SwissProt::P22008 (273 letters) >FitnessBrowser__ANA3:7023985 Length = 272 Score = 210 bits (534), Expect = 3e-59 Identities = 117/269 (43%), Positives = 167/269 (62%), Gaps = 1/269 (0%) Query: 1 MSTPRIAFIGAGNMAASLIGGLRAQGVPAAQIRASDPGAEQRAKIAGEFAIDVVESNAEA 60 MS +I FIGAGNM S+I GL G PAA ++A++P + +A +F + V + N A Sbjct: 1 MSQQKICFIGAGNMTRSIISGLIRSGYPAALVQATNPSQGKLDALAADFGVRVSQDNFSA 60 Query: 61 VADADVVVLSVKPQAMKAVCQALAPALKPEQLIVSIAAGIPCASLEAWLGQPRPVVRCMP 120 DADV+VLSVKPQ M+ VCQAL +L+++IAAGI +L Q +VR MP Sbjct: 61 AQDADVIVLSVKPQLMEQVCQALQGIDMSNKLVITIAAGIKAERYSQYLAQSITLVRTMP 120 Query: 121 NTPALLRQGASGLYANAQVSAAQCEQAGQLLSAVGIALWLDDEAQIDAVTAVSGSGPAYF 180 NTP + G +GLYA +S AQ A +L+S+ G +W+++E++I+ V A++GS PAYF Sbjct: 121 NTPMQIGVGMTGLYAPQPLSDAQQAIAERLMSSGGEIVWVNEESEINQVIALAGSSPAYF 180 Query: 181 FLLMQAMTDAGEKLGLSRETASRLTLQTALGAAQMALSS-EVEPAELRRRVTSPNGTTEA 239 FLLM++M DAG+++G+ A L Q ALGAA MA + E+ LR VTS GTT Sbjct: 181 FLLMESMIDAGKQMGMDEAKARSLVQQAALGAAMMAKQNPELTLGNLRENVTSKGGTTAQ 240 Query: 240 AIKSFQANGFEALVEQALNAASQRSAELA 268 AI +F+A +V+ A+ +R+ E+A Sbjct: 241 AIATFEAADLRGVVKNAMENCIKRAEEMA 269 Lambda K H 0.315 0.127 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 160 Number of extensions: 8 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 273 Length of database: 272 Length adjustment: 25 Effective length of query: 248 Effective length of database: 247 Effective search space: 61256 Effective search space used: 61256 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.7 bits)
Align candidate 7023985 Shewana3_1193 (pyrroline-5-carboxylate reductase (RefSeq))
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))
../bin/blast/fastacmd -i /tmp/list.16792.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.16792.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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