Align Succinylglutamate desuccinylase; EC 3.5.1.96 (uncharacterized)
to candidate 7024961 Shewana3_2132 succinylglutamate desuccinylase (RefSeq)
Query= curated2:A4Y6M4 (344 letters) >FitnessBrowser__ANA3:7024961 Length = 344 Score = 628 bits (1620), Expect = 0.0 Identities = 309/344 (89%), Positives = 323/344 (93%) Query: 1 MLQALLDSKDFLALTLAHPEQFDGEFSFNLGDHTQVEVWDTGVIVFEPIQNEGKDIVLSC 60 MLQALLDSKDFLALTLA+PE EFSF LG+HT+VEVW+TGVIVFEP Q +GKD++LSC Sbjct: 1 MLQALLDSKDFLALTLANPETLGDEFSFTLGEHTRVEVWNTGVIVFEPAQAQGKDVILSC 60 Query: 61 GVHGNETAPIELCNSLIKQLLQQKIIAKQRTLFLIGNPLAINNGTRIIDENMNRLFSGEH 120 GVHGNETAPIELCN+LIKQLLQQKIIAKQRTLFLIGNPLAINNGTRIIDENMNRLFSGEH Sbjct: 61 GVHGNETAPIELCNTLIKQLLQQKIIAKQRTLFLIGNPLAINNGTRIIDENMNRLFSGEH 120 Query: 121 SNPPGLVNPERVRAKKLEAYVDRFFTAAADGRQRIHYDLHTAMRASKHEKFAIYPYRPGR 180 SNPPGLVNPERVRAKKLEAYVDRFF AA GRQRIHYDLHTAMRASKHEKFAIYPYRPGR Sbjct: 121 SNPPGLVNPERVRAKKLEAYVDRFFKGAAAGRQRIHYDLHTAMRASKHEKFAIYPYRPGR 180 Query: 181 AFSGEQIMFLAASGVDTVLFHHEPTTTFSYFSSERYGADAFTIELGKVYPMGQNDMTRFI 240 A+S EQIMFLAASGVDTVLFHHEPTTTFSYFSSE+YGADAFTIELGKVYPMGQNDMTRFI Sbjct: 181 AYSAEQIMFLAASGVDTVLFHHEPTTTFSYFSSEQYGADAFTIELGKVYPMGQNDMTRFI 240 Query: 241 ATHEMFMRLITAKPLELDAFDADKVNLYQVCRVINKHFDDFEFTFATDVENFRSFPKGFV 300 A EMFMRLIT KPL L+ F ADKVNLYQVCRVINKHFDDFEFTFA DVENFRSFPKGFV Sbjct: 241 AAQEMFMRLITDKPLALEPFSADKVNLYQVCRVINKHFDDFEFTFAADVENFRSFPKGFV 300 Query: 301 LAREGGQEIKVEHEFESVVFPNAKVPIGNRTVICLIPAVNADVR 344 LAREGGQEIKVE EFE++VFPNAKVPIGNRTVICLIP+V DVR Sbjct: 301 LAREGGQEIKVEQEFEAIVFPNAKVPIGNRTVICLIPSVAPDVR 344 Lambda K H 0.323 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 513 Number of extensions: 11 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 344 Length of database: 344 Length adjustment: 29 Effective length of query: 315 Effective length of database: 315 Effective search space: 99225 Effective search space used: 99225 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 49 (23.5 bits)
Align candidate 7024961 Shewana3_2132 (succinylglutamate desuccinylase (RefSeq))
to HMM TIGR03242 (astE: succinylglutamate desuccinylase (EC 3.5.1.96))
../bin/blast/fastacmd -i /tmp/list.27837.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27837.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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