Align purine-nucleoside phosphorylase (EC 2.4.2.1) (characterized)
to candidate 7023824 Shewana3_1044 purine nucleoside phosphorylase (RefSeq)
Query= BRENDA::P0ABP8 (239 letters) >FitnessBrowser__ANA3:7023824 Length = 236 Score = 337 bits (864), Expect = 1e-97 Identities = 162/234 (69%), Positives = 197/234 (84%) Query: 1 MATPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVRGMLGFTGTYKGRKISV 60 MATPHINA G FA+ VL PGDPLRAKYIAETFLE+ +V +VR MLGFTGTYKG++ISV Sbjct: 1 MATPHINAVEGAFAETVLFPGDPLRAKYIAETFLENVEQVTDVRNMLGFTGTYKGKRISV 60 Query: 61 MGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNRIR 120 MG GMGIPSCSIY ELI D+GVK +IRVG+CGA+ VK+RDV+IGMGACTDS+VNR+R Sbjct: 61 MGSGMGIPSCSIYATELIKDYGVKNLIRVGTCGAISTDVKVRDVIIGMGACTDSQVNRLR 120 Query: 121 FKDHDFAAIADFDMVRNAVDAAKALGIDARVGNLFSADLFYSPDGEMFDVMEKYGILGVE 180 FK DFAAIA+++++ +++AK G RVGN+FSADLFY+PD +MFDVMEK G+LGVE Sbjct: 121 FKGQDFAAIANYELMNAVIESAKVKGTKIRVGNVFSADLFYTPDPQMFDVMEKMGVLGVE 180 Query: 181 MEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALESVL 234 MEAAG+YGVA EFGA+AL + TVSDHIRT E+TT+ ERQTTFNDMI + L++ + Sbjct: 181 MEAAGLYGVAHEFGARALCVVTVSDHIRTGEKTTSDERQTTFNDMIVMTLDAAI 234 Lambda K H 0.322 0.138 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 273 Number of extensions: 10 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 239 Length of database: 236 Length adjustment: 23 Effective length of query: 216 Effective length of database: 213 Effective search space: 46008 Effective search space used: 46008 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 46 (22.3 bits)
Align candidate 7023824 Shewana3_1044 (purine nucleoside phosphorylase (RefSeq))
to HMM TIGR00107 (deoD: purine nucleoside phosphorylase (EC 2.4.2.1))
../bin/blast/fastacmd -i /tmp/list.31025.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.31025.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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