Align UDP-glucose 4-epimerase (EC 5.1.3.7; EC 5.1.3.2) (characterized)
to candidate 7025632 Shewana3_2783 UDP-galactose 4-epimerase (RefSeq)
Query= metacyc::BSU38860-MONOMER (339 letters) >FitnessBrowser__ANA3:7025632 Length = 337 Score = 486 bits (1252), Expect = e-142 Identities = 233/336 (69%), Positives = 273/336 (81%) Query: 1 MAILVTGGAGYIGSHTCVELLNSGYEIVVLDNLSNSSAEALNRVKEITGKDLTFYEADLL 60 M ILVTGGAGYIG+HT VELLN+G E++VLDNLSNSS EALNRV+ ITGK +TFY+ D+L Sbjct: 1 MTILVTGGAGYIGTHTVVELLNAGSEVIVLDNLSNSSIEALNRVERITGKAVTFYQGDIL 60 Query: 61 DREAVDSVFAENEIEAVIHFAGLKAVGESVAIPLKYYHNNLTGTFILCEAMEKYGVKKIV 120 ++ + VF+++ I+AVIHFAGLKAVGESVA PLKYY NN+TGT ILC+ M ++ VK +V Sbjct: 61 NKALLQKVFSDHNIDAVIHFAGLKAVGESVAKPLKYYENNVTGTLILCQVMAEFKVKNLV 120 Query: 121 FSSSATVYGVPETSPITEDFPLGATNPYGQTKLMLEQILRDLHTADNEWSVALLRYFNPF 180 FSSSATVYG P + PITEDFP GATNPYGQ+KLM+E IL DLH +D W++A LRYFNP Sbjct: 121 FSSSATVYGDPASLPITEDFPTGATNPYGQSKLMVEHILADLHHSDPSWNIARLRYFNPV 180 Query: 181 GAHPSGRIGEDPNGIPNNLMPYVAQVAVGKLEQLSVFGNDYPTKDGTGVRDYIHVVDLAE 240 GAH SG IGEDPN IPNNLMP++AQVAVGK E LSVFGNDYPT DGTGVRDYIHVVDLA Sbjct: 181 GAHASGLIGEDPNDIPNNLMPFIAQVAVGKREALSVFGNDYPTHDGTGVRDYIHVVDLAL 240 Query: 241 GHVKALEKVLNSTGADAYNLGTGTGYSVLEMVKAFEKVSGKEVPYRFADRRPGDIATCFA 300 GH+KA+EK+ G YNLGTG GYSVL+MVKAFEK GK + Y+ A RRPGDIA C+A Sbjct: 241 GHLKAIEKLTTKPGLVTYNLGTGQGYSVLDMVKAFEKACGKSIAYQIAPRRPGDIAACYA 300 Query: 301 DPAKAKRELGWEAKRGLEEMCADSWRWQSSNVNGYK 336 +P AK +LGW+A LE+M SW WQS+N NGYK Sbjct: 301 NPDHAKTDLGWQATHSLEDMANSSWHWQSTNPNGYK 336 Lambda K H 0.315 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 472 Number of extensions: 8 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 339 Length of database: 337 Length adjustment: 28 Effective length of query: 311 Effective length of database: 309 Effective search space: 96099 Effective search space used: 96099 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 49 (23.5 bits)
Align candidate 7025632 Shewana3_2783 (UDP-galactose 4-epimerase (RefSeq))
to HMM TIGR01179 (galE: UDP-glucose 4-epimerase GalE (EC 5.1.3.2))
../bin/blast/fastacmd -i /tmp/list.27564.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.27564.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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