Align 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (characterized)
to candidate 7025322 Shewana3_2482 4-hydroxyphenylpyruvate dioxygenase (RefSeq)
Query= reanno::MR1:201123 (346 letters) >FitnessBrowser__ANA3:7025322 Length = 346 Score = 684 bits (1764), Expect = 0.0 Identities = 335/346 (96%), Positives = 341/346 (98%) Query: 1 MASELNPLGLLGIEFTEFASSDTDFMHKVFIDFGFSLLKKAKNKDILYYKQNDINFLLNK 60 MASELNPLGLLGIEFTEFAS D+DFMHKVFIDFGFSLLKKAKNKDILYYKQNDINFLLN Sbjct: 1 MASELNPLGLLGIEFTEFASPDSDFMHKVFIDFGFSLLKKAKNKDILYYKQNDINFLLNN 60 Query: 61 QREGFSAKFAKSHGPAICSMGWRVEDASFAHRVAVERGAKAADDSAKDLPYPAIYGIGDS 120 +REGFSA+FAKSHGPAI SMGWRVEDASFAHRVAVERGAKA DSAKDLPYPAIYGIGDS Sbjct: 61 EREGFSAEFAKSHGPAISSMGWRVEDASFAHRVAVERGAKAVADSAKDLPYPAIYGIGDS 120 Query: 121 LIYFIDTFGANNNIYATDFEDLSEPVITQEKGFIEVDHLTNNVYKGTMEHWANFYKNIFG 180 LIYFIDTFGA+NNIYATDFEDLSEPVITQEKGF+EVDHLTNNVYKGTMEHWANFYKNIFG Sbjct: 121 LIYFIDTFGADNNIYATDFEDLSEPVITQEKGFVEVDHLTNNVYKGTMEHWANFYKNIFG 180 Query: 181 FTEVRYFDISGVQTALVSYALRSPDGSFCIPINEGKGNDKNQIDEYLKEYNGPGVQHLAF 240 FTEVRYFDISGVQTALVSYALRSPDGSFCIPINEGKGNDKNQIDEYLKEYNGPGVQHLAF Sbjct: 181 FTEVRYFDISGVQTALVSYALRSPDGSFCIPINEGKGNDKNQIDEYLKEYNGPGVQHLAF 240 Query: 241 RSRDIVKSLDAMEGSSIQCLDIIPEYYDTIFDKVPQVTENRDRIKHHQILVDGDESGYLL 300 RSRDIVKSLDAMEGSSIQCLDIIPEYYDTIFDKVPQVTENR+RIKHHQILVDGDESGYLL Sbjct: 241 RSRDIVKSLDAMEGSSIQCLDIIPEYYDTIFDKVPQVTENRERIKHHQILVDGDESGYLL 300 Query: 301 QIFTKNLFGPIFIEIIQRKNNLGFGEGNFTALFQSIERDQMRRGVL 346 QIFTKNLFGPIFIEIIQRKNNLGFGEGNFTALFQSIERDQMRRGVL Sbjct: 301 QIFTKNLFGPIFIEIIQRKNNLGFGEGNFTALFQSIERDQMRRGVL 346 Lambda K H 0.321 0.140 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 657 Number of extensions: 23 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 346 Length of database: 346 Length adjustment: 29 Effective length of query: 317 Effective length of database: 317 Effective search space: 100489 Effective search space used: 100489 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate 7025322 Shewana3_2482 (4-hydroxyphenylpyruvate dioxygenase (RefSeq))
to HMM TIGR01263 (hppD: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27))
../bin/blast/fastacmd -i /tmp/list.18330.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.18330.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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