Align L-serine ammonia-lyase (EC 4.3.1.17) (characterized)
to candidate 7025132 Shewana3_2295 L-serine ammonia-lyase (RefSeq)
Query= BRENDA::P16095 (454 letters) >FitnessBrowser__ANA3:7025132 Length = 458 Score = 515 bits (1327), Expect = e-150 Identities = 258/456 (56%), Positives = 332/456 (72%), Gaps = 6/456 (1%) Query: 1 MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDSVTRVAVDVYGSLSLTGKGH 60 MIS+FDMFK+GIGPSSSHTVGPMKAGK F+ L + G + V + +++GSL TGKGH Sbjct: 1 MISVFDMFKIGIGPSSSHTVGPMKAGKIFMQHLADSGQIAQVDELRAELFGSLGQTGKGH 60 Query: 61 HTDIAIIMGLAGNEPATVDIDSIPGFIRDVEERERLLLAQGRHEVDFPRDNGMRFHNGN- 119 T A+I+GL G +P TVD DSI G + V + E L L+ G+ V F R++G+ +H Sbjct: 61 GTGKAVILGLMGEDPETVDTDSIDGILEQVSKNETLTLSCGK-VVKFTREDGITYHRRKT 119 Query: 120 LPLHENGMQIHAYNGDEVVYSKTYYSIGGGFIVDEEHFGQDAANEVS----VPYPFKSAT 175 LP H N M ++AY+ E ++ +TYYS+GGGFI+DE+ Q A+ S PY F S+ Sbjct: 120 LPAHANAMTLYAYSKGECIFERTYYSVGGGFILDEDEIHQRNASPASQIESAPYDFNSSA 179 Query: 176 ELLAYCNETGYSLSGLAMQNELALHSKKEIDEYFAHVWQTMQACIDRGMNTEGVLPGPLR 235 +LL C E G S+S L M NEL+L S++E+ ++WQTM+ CI+RG EG+LPG L+ Sbjct: 180 QLLDLCTEHGLSISSLMMANELSLASEEEVKAKLWNIWQTMKTCIERGYQKEGILPGGLK 239 Query: 236 VPRRASALRRMLVSSDKLSNDPMNVIDWVNMFALAVNEENAAGGRVVTAPTNGACGIVPA 295 + RRA AL R L + + + DP+ +DWV++FAL+VNE+NAAG RVVTAPTNGA GI+PA Sbjct: 240 LRRRAPALYRRLKAEGRNNVDPLTAMDWVDLFALSVNEQNAAGDRVVTAPTNGAAGIIPA 299 Query: 296 VLAYYDHFIESVSPDIYTRYFMAAGAIGALYKMNASISGAEVGCQGEVGVACSMAAAGLA 355 VL YYD F++ V D+ RY + A AIG LYK NASISGAEVGCQGEVGVACSMAA L Sbjct: 300 VLCYYDTFVQEVDIDVCARYLLTAAAIGILYKKNASISGAEVGCQGEVGVACSMAAGALT 359 Query: 356 ELLGGSPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIASVKAINAARMALRRTS 415 E++GG+ E V AAEIGMEHNLGLTCDPV G VQVPCIERNA+ ++KAINA+RMALR Sbjct: 360 EIMGGTVEHVENAAEIGMEHNLGLTCDPVGGLVQVPCIERNAMGAIKAINASRMALRGDG 419 Query: 416 APRVSLDKVIETMYETGKDMNAKYRETSRGGLAIKV 451 +VSLDKVI+TM +TGKDM +KY+ET++GGLA+ + Sbjct: 420 NHKVSLDKVIKTMMDTGKDMRSKYKETAKGGLAVNI 455 Lambda K H 0.318 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 626 Number of extensions: 23 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 454 Length of database: 458 Length adjustment: 33 Effective length of query: 421 Effective length of database: 425 Effective search space: 178925 Effective search space used: 178925 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (24.3 bits)
Align candidate 7025132 Shewana3_2295 (L-serine ammonia-lyase (RefSeq))
to HMM TIGR00720 (L-serine ammonia-lyase (EC 4.3.1.17))
../bin/blast/fastacmd -i /tmp/list.13610.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.13610.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.