Align 3-carboxy-cis,cis-muconate cycloisomerase; EC 5.5.1.2 (characterized, see rationale)
to candidate BPHYT_RS21425 BPHYT_RS21425 3-carboxy-cis,cis-muconate cycloisomerase
Query= uniprot:A0A0C4YE08 (470 letters) >FitnessBrowser__BFirm:BPHYT_RS21425 Length = 459 Score = 500 bits (1287), Expect = e-146 Identities = 267/449 (59%), Positives = 311/449 (69%), Gaps = 4/449 (0%) Query: 1 MPTSSRLTDPMFGSAATLAAFSDTATVQRMLDFEAALARAEASCGVIPADAAEAIAATCR 60 + +S+RLT + G+ ++ AT+QRMLD EAALARA A+ VIP A AI A C+ Sbjct: 2 LDSSARLTGLLCGTQPMNDIWAPRATLQRMLDVEAALARASAAHQVIPQTAVAAIEAACQ 61 Query: 61 AGEIDFDALAAAAVAGGNLAIPLVRQLTARVAARDAQAARYVHWGATSQDAIDTGMVLQL 120 A ++D DALA A GGNLAIPLV+QLTARV A DA+A++YVHWGATSQD IDT VLQL Sbjct: 62 ADQLDADALARDAALGGNLAIPLVKQLTARVKAADAEASKYVHWGATSQDIIDTATVLQL 121 Query: 121 REALQAVDADLKALGHACAALAAQHRDTPMVARTWLQHALPTTFGLKAAGWLDALRRDLR 180 R+ +D+ L++ A A LAA HR TPM+ RTWLQ ALP T GLK A WLDAL R Sbjct: 122 RDTFDLLDSSLQSTCDAVAKLAATHRTTPMIGRTWLQQALPITLGLKFAQWLDALLRHRE 181 Query: 181 RLDAARAQAATLQFGGAAGTLASLGAAAPAVATALGSALSLAVAPTPWHAYRDRMVEVAT 240 RLDA RA+A LQFGGAAGTLASL AAP V +L L L V PWH RDR+ E A Sbjct: 182 RLDALRARALVLQFGGAAGTLASLRDAAPQVTQSLAKELGLTVPTLPWHTQRDRIAETAA 241 Query: 241 TLGMLTGSLGKIARDVSLMMQTEVAEVAEPTGPGRGGSSTMPHKRNPVGCAAVLTAAVRV 300 GML G+LGKIARD+SL MQTE+ E+AEP G+GGSSTMPHKRNPVGCAAVLTAA R Sbjct: 242 LFGMLIGTLGKIARDISLQMQTEIDELAEPAAAGKGGSSTMPHKRNPVGCAAVLTAATRA 301 Query: 301 PPLVATMLAGMVQEHERALGGWQAEWDTLPQIVTLAAGALRQMLEVVGGLQVDAARMRAN 360 P LVAT+ AGMVQEHERALGGWQAEWD LP + LA GAL + ++ GL V+ R+ AN Sbjct: 302 PGLVATVFAGMVQEHERALGGWQAEWDALPDLARLAGGALANIEQIAAGLNVNVPRLAAN 361 Query: 361 LGVTHGLILAEAAMLELGGKIGRLPAHHLVEGACRRAVAEGTTLRQALGATLAEDAAHAG 420 L VTHGLIL EA ML LG IGRL AHHLVE A + A+ +G TL L A D A Sbjct: 362 LDVTHGLILGEAVMLALGDSIGRLDAHHLVERASKAAIRDGQTLFDVLAA----DPAVTA 417 Query: 421 LMDAAALDRVCDPANYAGQAAGFVDAVLA 449 + L ++ DPA Y GQA +VDA LA Sbjct: 418 HLPLERLKQLLDPAQYVGQAHAYVDAALA 446 Lambda K H 0.319 0.130 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 504 Number of extensions: 19 Number of successful extensions: 2 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 470 Length of database: 459 Length adjustment: 33 Effective length of query: 437 Effective length of database: 426 Effective search space: 186162 Effective search space used: 186162 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (24.3 bits)
Align candidate BPHYT_RS21425 BPHYT_RS21425 (3-carboxy-cis,cis-muconate cycloisomerase)
to HMM TIGR02426 (pcaB: 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2))
../bin/blast/fastacmd -i /tmp/list.1138.in -d ../tmp/orgsFit/orgs.faa -p T > /tmp/gapView.1138.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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